Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02031 ATGTCGGACACAGGTCGAGCACTACCAAAGTTTGGTGAATGGGATGTTAATGATCCAGCATCAGCTGAAGGCTACACAGTGATTTTCGAGAAAGTTAGGGACGAGAAAAAGACAGGTGCAGGCAAATCCGAGTCACAAAAGATTAATCCTCGTACCAAACCTCCGTTAGATCCTGCCAAAACACAAACTAAAAATTGGTTTTGTTGCATGCAAAGTCCTTCTGCAGAGTCATAG 234 0.4359 MSDTGRALPKFGEWDVNDPASAEGYTVIFEKVRDEKKTGAGKSESQKINPRTKPPLDPAKTQTKNWFCCMQSPSAES 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02031 77 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 70 IPR040387 -
Cca05g02031 77 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Cca05g02031 77 MobiDBLite consensus disorder prediction 33 63 - -
Cca05g02031 77 MobiDBLite consensus disorder prediction 43 63 - -
Cca05g02031 77 PANTHER PROTEIN NOI4 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02031 Cca-Chr5 40107305 40109029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02031 - - gmx:100817920 128.642
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02031 05 40107305 40109029 Cca05g02031 05 40107305 40109029 ECH
Cca09g01234 09 34569218 34572770 Cca05g02031 05 40107305 40109029 PCT