Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01180 ATGTTTGCAAAAGCCATGGATATTTCGGAGTACACAAGGATTGTTTTTGATAAACTTCAAAGATTTGAGCCTGAGCATGCTACAAAGATCATAGGATATCTGTTTCTCCAAGACCATGGTGAGCAAGACATGGTGAAATTGGCTTCACTCCCGGACCATTTAATTCGCGAGGTAGCATTCAAGGCCAGAACTGAGCTTCAAAAACTGGCTGTTAGATCAGCCATTCATCCAATTTCCCTTCCCATCAACTCTCAACAAGGTTTAAGCCATTTGTCAGTGATCTCCCCCAGCACTACTACTTCACTGGCAAGCTTCCAGGTTCAACAATCTCCTTATTGGGATCCTCAATGCGCTAGGAATACTAACGCAGAATTTATGACAATAGGTTATTTGGATTCTATCTCACAACTTCAAAAGCAGACCCCTTTGTTCAGTTTAGAGAATCACATGGATAATGCAAATTCTGGGACTGGTGGGATTGGTAATGATTACTATGGCTTAGATGCTTCTTCTGGTAATTTGGGAGGAGGGAAAACTGGTAGAAGGTTTGAATTTCCTGTTAAGACTTGTCACTATTTCAACAAAGGATTTTGTAAGCATGGAAGTAGCTGTAGATACTTTCATGGACAAGGTGTCCCTGATATATTCTCTCACATGTATGGCAATGATAGTTTTAGTGATGATCAAATTATTTCACCTGGCTCACTGGCACAATTAGAGTCAGAAATTGTTGAACTCCTGAAACTTAAAAAAGGTGGTTCTATATCAATTGCTTCTCTTCCAATGGCATACTATGATAGATACAAAAAAGTGCTTCAAGCAGATGGCTACCTGACTGAGAGTCAGAGGCATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAAAACAGTATTCGGCTAATTGACAGGCCTCATGGACAGCATTCCGTGGTTTTGGCAGAAGATGCTCCAAAGTTCAATGGAAAGGTAGATTATGGTAAATACATCAGTGCATCGCGACAAATATATCTGACATTTCCGGCTGATAGTACTTTTAGTGAGGGTGATGTTTCAAACTACTTTAGCACTTTTGGAAAAGTTGAAGATGTAAGGATTCCGAGTCAAGAGAGAAGGATGTTTGGATTTGTGACATTTGATGATCCTGAAACTGTTAAAATGATTTTGGATAAGGGAAATCCCCATTATGTTTGTGAATCTCGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAACTTATGGTCAGGAAGCATTCGGATAGGATTGAGCACCCGGTTTATTATTCGCCACACTATGTAGACATTGAGACTGAAGCTACCTCAAAATTTCTAGCTCCAAGAAGTTGCAGGAACCCTCGCTTTCTTCGGAGAGTGCTCATTGAACAGCAAGAGGAAGCAGCCTTTGAATTTCAGAGACGTTTCGCAGAGCTGCAACTGGCACAAAAATCTTTGTCCACTCCACCCCATTTAGGCTGCAACACTAATGGATTGAGAGTTTCAGATGATCATTTCAATGTCCAGCCCATAGAATCTCACAGTCATGCTCCTATTGACAAAGCTGGATATACAGATGTGAATTACACTGACGAGGACAGCAATCAAGGACTGAATCTCCCGGACAGCCCATTTTCATTTCCGGTTGATAGTGGAATTTCAGCAGTAATGTAG 1677 0.4109 MFAKAMDISEYTRIVFDKLQRFEPEHATKIIGYLFLQDHGEQDMVKLASLPDHLIREVAFKARTELQKLAVRSAIHPISLPINSQQGLSHLSVISPSTTTSLASFQVQQSPYWDPQCARNTNAEFMTIGYLDSISQLQKQTPLFSLENHMDNANSGTGGIGNDYYGLDASSGNLGGGKTGRRFEFPVKTCHYFNKGFCKHGSSCRYFHGQGVPDIFSHMYGNDSFSDDQIISPGSLAQLESEIVELLKLKKGGSISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKVDYGKYISASRQIYLTFPADSTFSEGDVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKMILDKGNPHYVCESRVLVKPYKEKPKLMVRKHSDRIEHPVYYSPHYVDIETEATSKFLAPRSCRNPRFLRRVLIEQQEEAAFEFQRRFAELQLAQKSLSTPPHLGCNTNGLRVSDDHFNVQPIESHSHAPIDKAGYTDVNYTDEDSNQGLNLPDSPFSFPVDSGISAVM 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01180 558 Coils Coil 463 483 - -
Cca09g01180 558 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 396 IPR000504 GO:0003723
Cca09g01180 558 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 6 558 - -
Cca09g01180 558 ProSiteProfiles OST-type HTH domain profile. 235 318 IPR025605 -
Cca09g01180 558 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 6 558 - -
Cca09g01180 558 Pfam OST-HTH/LOTUS domain 235 314 IPR025605 -
Cca09g01180 558 Gene3D - 341 415 IPR012677 -
Cca09g01180 558 SUPERFAMILY RNA-binding domain, RBD 348 429 IPR035979 GO:0003676
Cca09g01180 558 CDD RRM_AtC3H46_like 339 408 IPR034365 -
Cca09g01180 558 SMART rrm1_1 338 408 IPR000504 GO:0003723
Cca09g01180 558 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 413 IPR000504 GO:0003723
Cca09g01180 558 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01180 Cca-Chr9 33356936 33361246 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01180 - - gmx:100806206 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01180 09 33356936 33361246 Cca09g01180 09 33356936 33361246 ECH
Cca09g01180 09 33356936 33361246 Cca05g02003 05 39896364 39901972 PCT