Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02003 ATGCTCTTTGATGGTGAAAGAATTATGGATATTTCTGATTACACAAGTATTGTCTTTGATAAAATCCGGAAATTTGAGCCAGAACTTGCTAGAAAGATAATTGGCTATCTCCTAATGCAAGATGATGGTGAACAAGAAATGGCTAAATTGGCTTCATGCCCTGACTATTTCATCCATGATGTGGCAGTTAAGGCTAAAAATGATCTTCAAAGATTGAATGCTAAACCAGATATGCTTTCAATTTCACCAACCGTCAACCCTCACCAAGGTTTAGGCCATTTATCAGTAATCTCCCCTAGAACCCCTACTTCGCCAAACTTCCAGCTGCCCCCTGCCTATTGGGATCCACAACCTGCTAGCAACATCAATCCAGACTTGATGGCAATGAATTACTTGGATTCCATCGCAGAACTTCAGAAGCAAACGCAGTTGCTCATGTTGGAGAACCGTTTAGATGCTATAAATACTGGGAGTGGGGGGATTGGAAATGATTACTATGGCTTAGATGCTTCTGCTGCCAATTTGGAAGTAAAAACTGGGAGAAGATTTTCTGAATTTCCGACGAAGATGTGTCACTACTTCAACAAAGGATTCTGCAAGCATGGAACTAGCTGCAGATTCTATCATGGGCAAGTTGTGCCAGAGAATTACTCTCAGATGTATGGAAATGATGCTATCAGTGATGATCCGGTGATTTCCCCGGGGTCGCTAGCGCAATTAGAGTCAGAAATCATTGAGCTCCTAAGATCAAGAGGCAGTCCAATGTCAATTGCTTCGCTACCAATGGCATACTATGATAAGTATAAAAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAAAGACATGGTAAGTCTGGTTATAGTTTGACAAAGCTTCTCGCGCGACTAAAAAACAGCATTCGGCTAATAGGAAGACCTCATGGCCAGCATTCAGTGATTCTGGCTGAAGATGCTCCCACACAAATACACAAGGCAGATTTTGCTCGAAATATCAGTGCATCGCGACAGATATATCTGACGTTCCCAGCTGATAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAACACATTTGGACCTGTTGCAGATGTTAGAATTCCAAACCAACAGAGAAGGATGTTTGGATTTGTGACATTTGTTCATTCAGAAACTGTCAAAACTGTTTTGGCTAAGGGGAATCCCCATTGTGTTCGGGGTTCTCGAGTGCTTGTGAAACCATATCGGGAGAAAGCTAAGCCAATTGAAAGGAAGTACACTGATAGAATTGAGCATTCTGTTTGTTATTCACCACATTTTGTAGATATGGACTCTGAACTTAGCCCAGTTCCAAGAAGTTGTGGGGACCATAGATCCTTTAGGAGACAGCTAATTGAAGAGCAAGAGCAAGCCTTGGAACTTCAGAGGAGAAGTCTTGCACAGCTGCAGTTTGTCCAAAAACCTCTCACCACTTCACCTCATTTTGGCTTCTCTTTGGATGAGTCAAGAATTTCAGATGATCACTTCAATTTCCAGCTGGCAGAAGAATCTTTCAGTTATCCACTGCATGACCAGTCCAGGCACAGAGACACCAATTTCTCTGATGAGGACAGCAATCAAGGACTCAATCTCCCGGACAGTCCTTTCTCATTTCCAACAGATAGTGGGATGTAA 1659 0.4244 MLFDGERIMDISDYTSIVFDKIRKFEPELARKIIGYLLMQDDGEQEMAKLASCPDYFIHDVAVKAKNDLQRLNAKPDMLSISPTVNPHQGLGHLSVISPRTPTSPNFQLPPAYWDPQPASNINPDLMAMNYLDSIAELQKQTQLLMLENRLDAINTGSGGIGNDYYGLDASAANLEVKTGRRFSEFPTKMCHYFNKGFCKHGTSCRFYHGQVVPENYSQMYGNDAISDDPVISPGSLAQLESEIIELLRSRGSPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIGRPHGQHSVILAEDAPTQIHKADFARNISASRQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKTVLAKGNPHCVRGSRVLVKPYREKAKPIERKYTDRIEHSVCYSPHFVDMDSELSPVPRSCGDHRSFRRQLIEEQEQALELQRRSLAQLQFVQKPLTTSPHFGFSLDESRISDDHFNFQLAEESFSYPLHDQSRHRDTNFSDEDSNQGLNLPDSPFSFPTDSGM 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02003 552 Gene3D - 337 416 IPR012677 -
Cca05g02003 552 SMART rrm1_1 338 408 IPR000504 GO:0003723
Cca05g02003 552 ProSiteProfiles OST-type HTH domain profile. 236 318 IPR025605 -
Cca05g02003 552 SUPERFAMILY CCCH zinc finger 185 211 IPR036855 GO:0046872
Cca05g02003 552 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 9 551 - -
Cca05g02003 552 Pfam OST-HTH/LOTUS domain 236 314 IPR025605 -
Cca05g02003 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 404 IPR000504 GO:0003723
Cca05g02003 552 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 551 - -
Cca05g02003 552 MobiDBLite consensus disorder prediction 519 552 - -
Cca05g02003 552 Coils Coil 452 472 - -
Cca05g02003 552 CDD RRM_AtC3H46_like 339 408 IPR034365 -
Cca05g02003 552 MobiDBLite consensus disorder prediction 531 552 - -
Cca05g02003 552 ProSiteProfiles Zinc finger C3H1-type profile. 185 212 IPR000571 GO:0046872
Cca05g02003 552 SUPERFAMILY RNA-binding domain, RBD 347 419 IPR035979 GO:0003676
Cca05g02003 552 Gene3D - 182 244 - -
Cca05g02003 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 424 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02003 Cca-Chr5 39896364 39901972 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02003 - - gmx:100818984 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02003 05 39896364 39901972 Cca05g02003 05 39896364 39901972 ECH
Cca09g01180 09 33356936 33361246 Cca05g02003 05 39896364 39901972 PCT