Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01176 ATGTCTGCACTGAAAACGATCTCAGAAGCCCTGAACCTTGTCGATTCCAAAAAAGAGAATCTGAAGAAAGCTTACGACGATCTCCAATCCCTTCTCAATCCCCTCCCTCTCTCATGGCCCGACCTCGATTCCCACTTCACCTCGCTCCACCACTCCCTCTCCCACCGCTTCCACCTCCTccaatcccaatcccaatcccaaaccctaaccctaaccccaatttccgacccaccaccccaaacccCCCAAAATGCGACCTTTTCATCAAATCCTGCCGACCCATCACCCAACCGTGACAATTCTTCACCTGGGGTGTCCCCCCAAAACGACGCCGTTCCTGGTCCGGTTGCGCCCAGGGAGGAGCTAATCCATCTCTGCGAGAAAATGGACGGTGTGGGCTTGAGGAATTACTTGAATGACCACTTTGAGGACAGGGACAGGGTTCAGGCGGAGCTTCCCGGCGCGTTTCGGCACGCGCCGGATGCGGGCGTGGTGGTTCTGGGAGCGTTGGAGGGGTTTCATGGAGAAGAGTGTGGCGAATTGAAGGATTGGGAGTTGAGGAACATGAGGAGGACCTGCATTGTGTTGATGAAGCAGTTTAGGGCTTCTGgtgtgagtgtgagtggtgaggcgagtgtgagAGCCAGGGGGTTGGCTTTGGAATGGAAGGAGAGGGTGGTGGGTGATGATGATCCCGGTGCTCTTGGAGCTTTGGGGTTTCTGCATTTGGTTTATGCGTTTGGTTTGGTCTCTGAATTCAGCTTGGATGGACTTGTTGACATTTCGGTCATGGGCCCCGCCAACGCCGAGTTCCTCGAGATGTGCCGGGCGGTCGGGTTGACGGAGAGAGTTCCTGATATTGTCCAGAAACTTATAGCTAACGACAAACATATGGCAGCTGTCAAGTATATTTTTGAGTTTAATCTTGCTGATAGGATTCCACCTGTTCCTATTTTGAAAGCTTGTGTGGAACATTCTAAGGAACTTGCCACTAGACTTTCCAAGGAACCAAAGTCAGCAATTGAGAGTACAAATAAAGAAATTAATACGCTGAGATCAGTGATCAAGATTATAGAGAATCATGAGCTTGAATCTGAATACCCAAGAGCTAGCCTTGAGCAGCGTATAAAGCAATTAAAGAGGCAAAAGACAGATATTATGCGTCCTGTACTAGCTTCTGCTGCAAAGAATTCTCAGCGCAaacagcaacagcaacaacaacaacagccgcaaAGGAGAAATAAGCAGAAGCCAAAACAGACTGGTATCAAGCGTCCCTGGACATCTGCTCCAGTTGGCCCTGCACCTGTCCTCAAGAACATCAATAATGTCAATTCAACAATGCACCACTACCAGCAACCTCCTGCCCATCCATCAGGTTTGTTTCCAGAGCATCCAAATCCATACATGAGCACGCCAGCCATGCCATATGGCATGTTGGCTCCTTCCCCAAATGTTCCTCCTTATGCAGTTCGTTCAGCTGGACCTTATGGTCATGATGGTCTCCCAATGGGTCCCAGTGGCAACCCCAGTCTAGGTGGTGCTCATCTAAGCTCGTCAGAGGCACATGTGCCTACTGGTTATTATGATAGAGCCTCTAATTATGGTGGTATTGATCCGCAACATTATTACCAAACATCTTATTACCCCCAATAG 1656 0.4553 MSALKTISEALNLVDSKKENLKKAYDDLQSLLNPLPLSWPDLDSHFTSLHHSLSHRFHLLQSQSQSQTLTLTPISDPPPQTPQNATFSSNPADPSPNRDNSSPGVSPQNDAVPGPVAPREELIHLCEKMDGVGLRNYLNDHFEDRDRVQAELPGAFRHAPDAGVVVLGALEGFHGEECGELKDWELRNMRRTCIVLMKQFRASGVSVSGEASVRARGLALEWKERVVGDDDPGALGALGFLHLVYAFGLVSEFSLDGLVDISVMGPANAEFLEMCRAVGLTERVPDIVQKLIANDKHMAAVKYIFEFNLADRIPPVPILKACVEHSKELATRLSKEPKSAIESTNKEINTLRSVIKIIENHELESEYPRASLEQRIKQLKRQKTDIMRPVLASAAKNSQRKQQQQQQQQPQRRNKQKPKQTGIKRPWTSAPVGPAPVLKNINNVNSTMHHYQQPPAHPSGLFPEHPNPYMSTPAMPYGMLAPSPNVPPYAVRSAGPYGHDGLPMGPSGNPSLGGAHLSSSEAHVPTGYYDRASNYGGIDPQHYYQTSYYPQ 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01176 551 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 1 550 - -
Cca09g01176 551 Coils Coil 11 31 - -
Cca09g01176 551 MobiDBLite consensus disorder prediction 69 115 - -
Cca09g01176 551 PANTHER FRIGIDA-LIKE PROTEIN 1 550 - -
Cca09g01176 551 MobiDBLite consensus disorder prediction 395 416 - -
Cca09g01176 551 Pfam Frigida-like protein 117 386 IPR012474 -
Cca09g01176 551 MobiDBLite consensus disorder prediction 393 437 - -
Cca09g01176 551 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01176 Cca-Chr9 33283084 33288236 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01176 - - gmx:100818664 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01176 09 33283084 33288236 Cca09g01176 09 33283084 33288236 ECH
Cca09g01176 09 33283084 33288236 Cca05g01997 05 39862863 39865195 PCT