Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01997 ATGGAGGGAACGAAGACGATCTCAGCGGCACTGAAACTGGTGGACGCCAAGAAAGAGAATCTGAAGAAAGCATTCGAAGATCTCCAAAGCCActcctctctcctcgcctccctccctctctcATGGCCCCAACTCGACGCCCACTTCACCTCCCTCCACGCCGCCCTCTCCCACCGCTTCCGCCTCCTCCAATCCCAAAACGACCTCGCATTGCCCAAAACGCACGCCCACCATCTCACCGCGCTCTGCGCCAATTCAAACGCCACAGCGCTGCGGGACTACGTGGGGGACCATCTCAAGGACAGGCTCGCCCTCGAGGCCGCGCTCCATAGCGCGCTAAAGTGCGCCCCCGATCCCGCCTCCCTCGCCATCGATTGTTTGGGCGGTGTTTTTGGCGCCAACGCGGTGAAGGACGACAAGGAGGCCAGGAAGTTGAAGCGGACCTGCTGCGTCCTGTTCCGGCAGCTGAGGCTGGCGGCTGTGGCCGTGTCCATGACTGTGGCGAAGAGGGCGAAGAGGGTTTGTGCTGAGTGGAAGGCCAGTTTGGTGGGTGATGCCGCTTTGGATGGCCTTGGGGCCATGGCTTTCTTGCTCTTTCTGGCGGCTTATGGCTTGTTTTCCGAGTTGACGCCCAATGAGTTTCTCTCTTTCTCTGCTACTGCTGCTGCCAATGAGGACCTTCCTGAGCTCTACCGGAGTGTCGGCTTCACTCACAAAGTTCCAGGTCTTGTTCAGAAACTTATTGACAGGTGCAAACATGTTATGGCTGTCAGGTATATTTTTGAGTTCAATCTTGCTGATAAGATTCCACCGGTTCCCATTTTGAAAGCTCATGTGAATGAGTCTCAGAAGCTTGCTAAAAGGCTTTCCGATGAAGGAAAGACACTTAATGAGATCACCGCGAGAGAAATCCATGCACTGAAATCGGTGTTAAAGGTTATTGAGACTCATAATCTTGAGTCTGAATATCCCCCTGAAAGCATTCAACAGCGTATAGAGCAATTGACGAAGCACAAGGCCAATGTAAGATATGCGGCATCAGCTTTTTCTGCAAAGCCTCCTCAGCATCAGCAACAACAAAGTGGGATCAAGCGTCCTAGATTGTCTGCCCCTGTTGCTTCTGCAGCTGTCCTTGATAGTGTCAGTGGTGCCAGTTCAACTGTTCACCACTACCAACAACCTCATTTCCAGTCATCAGGTTTGTTGCCGGAACATCTAAATCCATACATGAGCTTGCCAAACATGCCATATGGCATGAAGACTCCAACCCCAACCATCTCGCCTTATACAGGTGCTTCAACTGGGCCTTATGGCCTTGATGGTGTCTCAATGGGTCCCAGTGGCAACCTTGGTCAAGGTGGTTCTCTTCCAAATTCATCAGAGCCACTTGTGCCATCTGGTTATTATGATAGTGTCTCTGCCTATGGTGGTTATGGTCTACAATATTTATACCCAACATCTTATCCTCAGTAG 1473 0.5064 MEGTKTISAALKLVDAKKENLKKAFEDLQSHSSLLASLPLSWPQLDAHFTSLHAALSHRFRLLQSQNDLALPKTHAHHLTALCANSNATALRDYVGDHLKDRLALEAALHSALKCAPDPASLAIDCLGGVFGANAVKDDKEARKLKRTCCVLFRQLRLAAVAVSMTVAKRAKRVCAEWKASLVGDAALDGLGAMAFLLFLAAYGLFSELTPNEFLSFSATAAANEDLPELYRSVGFTHKVPGLVQKLIDRCKHVMAVRYIFEFNLADKIPPVPILKAHVNESQKLAKRLSDEGKTLNEITAREIHALKSVLKVIETHNLESEYPPESIQQRIEQLTKHKANVRYAASAFSAKPPQHQQQQSGIKRPRLSAPVASAAVLDSVSGASSTVHHYQQPHFQSSGLLPEHLNPYMSLPNMPYGMKTPTPTISPYTGASTGPYGLDGVSMGPSGNLGQGGSLPNSSEPLVPSGYYDSVSAYGGYGLQYLYPTSYPQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01997 490 Coils Coil 11 31 - -
Cca05g01997 490 PANTHER FRIGIDA-LIKE PROTEIN 74 485 - -
Cca05g01997 490 PANTHER FRIGIDA-LIKE PROTEIN 3 68 - -
Cca05g01997 490 Pfam Frigida-like protein 76 344 IPR012474 -
Cca05g01997 490 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 3 68 - -
Cca05g01997 490 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 74 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01997 Cca-Chr5 39862863 39865195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01997 - - gmx:100808558 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01997 05 39862863 39865195 Cca05g01997 05 39862863 39865195 ECH
Cca09g01176 09 33283084 33288236 Cca05g01997 05 39862863 39865195 PCT