Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01172 ATGGATTCCCCTCAATCTGTTGTGTCACCCTTCAGGAGCTCAGTGTTGGGTGAGAGTGAGAAGCACAAGTCTGATGTTTTCTCGGGAAACTCTAGTCCTTTGTCCAAGGACATTGAAGTGAATGGGAAGGAAGTTGTCATGTCAAATGTAGATGAGTTTCTTGGAGTGCTCGATGTTTACATACACCAGGCCAGGGACATTCAAAACATTTGCATATACCACAAGCAAGATGTTTATGCTAAGATTTGCCTGACCAGTAACCCTGAGAACAGTGTGTCTACCAAAACCATCAATGGAGGAGGAAGGAACCCTGTGTTCAACGAGAATCTCAAAGTCAATGTTAGGACTGTTGATGCTTCTCTCAAGTGTGAGATATGGATGCTTAGCAGGGTGAAAAATTATCTAGAGGACCAATTGCTTGGTTTTGCTTTGGTGCCTTTGTCTGAAGTACTAGTCCAGAATGGGAAACTTGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTGTTCCATTCTCCTTCAGGTTTTGTTCAGTTGTCACTTTCTTACACTGGTGCTTCACCTGATGTTATGGCAATTTCTGCTATGCCGACCAAGGTGGCCACGGATGCTGCAACATCCGAGTCACTAGCAAGGGATTTAGACAAAATTGAGTTTCCGGATCCTAAGATTGTGAATGAAGACCACTTGATGGTTTCGGAATACTTTGGTATTCCATGTGAGGAGACTCAGTGTTCAGATAGCTTGGCTACTTCTGATGCAGAAAATCAGAGTTCCGAAGCCGGTGTTCGGCTTGTGGAAAGCTTTGCAGCCTGCAGTGTTGAATCTGTTCAGCCTCCTAAGGTTGATTCCCCACCAAGCAGTGTGTCAACAAATGGGGTTTCATCACCTTCTGTGCCTGCAAGTTCAGAATCATCTGATGCTGCTGCTTCTAAGCCTCCGAGTCAGGAGCAAGTTTCAGGCACCAAAGAGGACAAAAATGTGGATGCCAAAGATGGTGAGAGTGATTCCTCAAGTGGGGTTCCTAGTGACTCATTCCCTAAACCTCTTGTGAGTGTAAACATTGAGCCTGAGCCAAAGGTGGTTCAGCAGGATATAGGAGACATGTACATGAAAAGCATGCAGCAATTCACTGAGTCATTAGCAAAAATGAAGCTCCCTATGGACTTTGAAAGTGAACCAACTAGTTCAGGAAATTCAACCACTGAGCAGAAACTACAGCCATCAAAGAGCAACAATTCCCGTGTGTTTTATGGCAGCAGAGCTTTCTTCTGA 1272 0.445 MDSPQSVVSPFRSSVLGESEKHKSDVFSGNSSPLSKDIEVNGKEVVMSNVDEFLGVLDVYIHQARDIQNICIYHKQDVYAKICLTSNPENSVSTKTINGGGRNPVFNENLKVNVRTVDASLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLSLSYTGASPDVMAISAMPTKVATDAATSESLARDLDKIEFPDPKIVNEDHLMVSEYFGIPCEETQCSDSLATSDAENQSSEAGVRLVESFAACSVESVQPPKVDSPPSSVSTNGVSSPSVPASSESSDAAASKPPSQEQVSGTKEDKNVDAKDGESDSSSGVPSDSFPKPLVSVNIEPEPKVVQQDIGDMYMKSMQQFTESLAKMKLPMDFESEPTSSGNSTTEQKLQPSKSNNSRVFYGSRAFF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01172 423 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 52 185 IPR035892 -
Cca09g01172 423 Pfam C2 domain 55 162 IPR000008 -
Cca09g01172 423 MobiDBLite consensus disorder prediction 276 358 - -
Cca09g01172 423 PANTHER EXPRESSED PROTEIN 1 423 - -
Cca09g01172 423 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 423 - -
Cca09g01172 423 MobiDBLite consensus disorder prediction 279 320 - -
Cca09g01172 423 SMART C2_3c 56 159 IPR000008 -
Cca09g01172 423 MobiDBLite consensus disorder prediction 1 33 - -
Cca09g01172 423 CDD C2 57 163 - -
Cca09g01172 423 ProSiteProfiles C2 domain profile. 30 161 IPR000008 -
Cca09g01172 423 MobiDBLite consensus disorder prediction 387 412 - -
Cca09g01172 423 MobiDBLite consensus disorder prediction 391 412 - -
Cca09g01172 423 Gene3D C2 domain 51 204 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01172 Cca-Chr9 33214669 33217562 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01172 - - gmx:100796499 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01172 09 33214669 33217562 Cca09g01172 09 33214669 33217562 ECH
Cca09g01172 09 33214669 33217562 Cca05g01994 05 39838649 39841622 PCT