Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01994 ATGGAGTCCCCACAATCTGTTGTGTCACCATTCAAGAGTTCTGTCTTGGGTGAAGCTGAGAAGTATAGGTCTGATATTTTCACAAAAAGCTCAGGTCCTTTGTCTAAGGACATTGAAGTCAATGGAAAGGAAGCTGCTGTGTCCAATCCAGAGGACTTCATTGGTGTTGTTGATGTTTACATTCATCAGGCAAGAGACATTCATAACATATGCATATACCACAAGCAAGATGTTTATGCTAAGATTTGCTTGACTAGTGACCCTGAGAATACTGTCTCTACCAAGACAATCAATGGAGGAGGAAGAAACCCTGTCTTCAACGAGAATCTTCGCCTAAACGTTAGGACGGTTGATTCGGCTATCAAATGTGAAATTTGGATGCTGAGTAGGGTGAAGAATTATCTTGAAGATCAGTTGCTTGGTTTTGCTTTGGTGCCTTTTTCTGAAGTACTAGTGAAAGATGGCAAGCTAGAGAAAGAGTTCTCTCTTTCCTCAACTGATCTATTCTATTCCCCAGCTGGTTTTGTTCAACTGTCTCTCGCTTACACCGGCGCTTCGCCTGATGTTATGGCGATTTCTGCAATGCCTACCGATAAGGAATCCGAATCATGCGAATCACTGGTCAGAGATTTGGACAAAATCGAATTCCCGGATCCGAAAATTGTAACCGAAGACCGCCTGATGGTTTCGGAATATTTTGGCATTCCATGTGAGGAGAGCCAGGGTTCTGATAGCTTGAACACTACTGATACTGAGAATCTGAGTTCTGAAGCAGGTGTTCAACTTGTGGAGAGCTTCTCTGCATGCAGTGTTGAATCTGTCCAACCTCCTAATCCTAAGGCTGATTCTCCACCTAGCAGTGTGTCAACAAATGGGGTCTCATCTCCTTCAGTGGCTGCAAGCACAGACTCATCGGATGCTGCTGCTTCCAAGTCTCCCAATCAGGAACAAGTTTCTAGCATCAAGGAGAAAAATGGGGATGCCAAAGAGGGTGAGAGTGATTCCTCAAATGGGGTGCTGAATGAGCCATTTCCTAAGCCTGTTTTAACTGTGAACATTGAGCCAGAACCAAATGTGGTGCAGCAGGATTTTGTAGACATGTACATGAAAAGCATGCAACAATTCACCGAGTCATTGGCGAAAATGAAGCTTCCTATGGACTTTGAAAGTGGACCAACTAGTTCAGGAAACTCAAGCTCTGAACAGAAGTTGCAGACACCAAAGAGCAGTAACTCTAGGGTGTTTTATGGTAGCAGGGCTTTCTTCTGA 1269 0.4405 MESPQSVVSPFKSSVLGEAEKYRSDIFTKSSGPLSKDIEVNGKEAAVSNPEDFIGVVDVYIHQARDIHNICIYHKQDVYAKICLTSDPENTVSTKTINGGGRNPVFNENLRLNVRTVDSAIKCEIWMLSRVKNYLEDQLLGFALVPFSEVLVKDGKLEKEFSLSSTDLFYSPAGFVQLSLAYTGASPDVMAISAMPTDKESESCESLVRDLDKIEFPDPKIVTEDRLMVSEYFGIPCEESQGSDSLNTTDTENLSSEAGVQLVESFSACSVESVQPPNPKADSPPSSVSTNGVSSPSVAASTDSSDAAASKSPNQEQVSSIKEKNGDAKEGESDSSNGVLNEPFPKPVLTVNIEPEPNVVQQDFVDMYMKSMQQFTESLAKMKLPMDFESGPTSSGNSSSEQKLQTPKSSNSRVFYGSRAFF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01994 422 SMART C2_3c 56 159 IPR000008 -
Cca05g01994 422 MobiDBLite consensus disorder prediction 390 411 - -
Cca05g01994 422 MobiDBLite consensus disorder prediction 384 411 - -
Cca05g01994 422 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 422 - -
Cca05g01994 422 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 52 184 IPR035892 -
Cca05g01994 422 CDD C2 57 163 - -
Cca05g01994 422 ProSiteProfiles C2 domain profile. 30 161 IPR000008 -
Cca05g01994 422 MobiDBLite consensus disorder prediction 284 321 - -
Cca05g01994 422 PANTHER EXPRESSED PROTEIN 1 422 - -
Cca05g01994 422 MobiDBLite consensus disorder prediction 269 350 - -
Cca05g01994 422 Gene3D C2 domain 51 206 IPR035892 -
Cca05g01994 422 Pfam C2 domain 56 161 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01994 Cca-Chr5 39838649 39841622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01994 - - gmx:100781587 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01994 05 39838649 39841622 Cca05g01994 05 39838649 39841622 ECH
Cca09g01172 09 33214669 33217562 Cca05g01994 05 39838649 39841622 PCT