Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01149 ATGTCCAAGGATGGCACACCCTTTTGCTTAAGCTCTATAGATCTTTCAGAGAGCACAACAGTTTCTAACACAAAATTCAAAAACCGTGCAACAACTAATCGGGAGCTTAAAAATGGAAGTGGCATATATACATTCAGCTTGACATGGGATGAGATAAAAACATTGACACCCTCAATATTGAACCCTTATAAGAAATACTTACTGTCCCGGAATCCAAAATTCAAAAATCAAGGAAAACTTTTAACCTTGTCTGATTTTTTGATCTTGACTGAAGGCTCTCGCATCTTGATCAGCATAGAGAATGCTGCCTATCTTGCACAGAAGCAGAAATTAAGTGTGACCAATGCAGTCCTTAATGCTTTACAGAAAGCAAAACCAAGATCACATAAAGTCATGATTCAGTCAACTCATAGCTCTGTGCTTAAAATATTCAAAGATAAATCCAAATATGAAAGGGTTTACAAGATTGATGAGAATATTCGCGATGCCACTGACTCAGCAATTAAGGAAATCAAAACATTTGCTGATTCTGTGGTAATAGGAAAGACATCAGTTTTTCCTGAAACTGAAGCTTTTCTAGTTAGCTCTACAAACACTGTGACAAGGCTAAAATCATTTAAGATCCCAGTTTATGTAGAAACATTCAGCAATGAATTTGTGTCTCAAGCATGGGACTACTACTCAGATGCATCTATTGAGATAAATTCATTTGTCATTGGACTCGAGGTTAATGGCATTATCACTGACTTCCCTAAGACAGCTGATAGATACAGGAGGAACTTGTGTTTAAAGCATAGTAAAAAAGCACCTTATATGAGACCTATTGAACCTGGCAAACTCTTACAACAAATTTCTAAGTTATACTTTCCATCACTTCCCCCTACACTCCCCGTGTTGACTAAAAATAATGTGACAGAGACACCTTTGCCTGGTATTTCTAGAAGAGTTCCAACTACCAAAGGTGCTGCTGCAGTAGGAACTGTAGCTCCTGCCTCCATCACAACATAA 1008 0.377 MSKDGTPFCLSSIDLSESTTVSNTKFKNRATTNRELKNGSGIYTFSLTWDEIKTLTPSILNPYKKYLLSRNPKFKNQGKLLTLSDFLILTEGSRILISIENAAYLAQKQKLSVTNAVLNALQKAKPRSHKVMIQSTHSSVLKIFKDKSKYERVYKIDENIRDATDSAIKEIKTFADSVVIGKTSVFPETEAFLVSSTNTVTRLKSFKIPVYVETFSNEFVSQAWDYYSDASIEINSFVIGLEVNGIITDFPKTADRYRRNLCLKHSKKAPYMRPIEPGKLLQQISKLYFPSLPPTLPVLTKNNVTETPLPGISRRVPTTKGAAAVGTVAPASITT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01149 335 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 334 - -
Cca09g01149 335 Gene3D Phosphatidylinositol (PI) phosphodiesterase 1 257 IPR017946 GO:0006629|GO:0008081
Cca09g01149 335 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN 1 334 - -
Cca09g01149 335 Pfam Glycerophosphoryl diester phosphodiesterase family 1 253 IPR030395 GO:0006629|GO:0008081
Cca09g01149 335 ProSiteProfiles GP-PDE domain profile. 1 258 IPR030395 GO:0006629|GO:0008081
Cca09g01149 335 SUPERFAMILY PLC-like phosphodiesterases 1 258 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01149 Cca-Chr9 32780437 32783916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01149 1 334 Receptor kinase-like Gene Family AT4G26690 53.801 5.36e-116 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01149 - - gmx:100813869 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01149 09 32780437 32783916 Cca09g01149 09 32780437 32783916 ECH
Cca05g01990 05 39796716 39803227 Cca09g01149 09 32780437 32783916 PCT