Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01990 ATGTGGAACCCACGCGCTCTTTATTCtccactcgctcttcctcttcttcttcttcttcttctccacttcctccttgctctCGTCTCTGCTCAGAGATCTGTGTGGAACACACTCAACGGAGTTGCACCGGTGGTTGTGGCGCGTGGTGGATTTTCGGGGATATTTCCGGATTCAAGTGATGGTGCCTATAATTTGGCAGTGATTACGAGTGGACCTGATGTGTATGTGTCGTGTGATGTGCAATTGACCAAGGATGGAGTTGGGATTTGTCTTCCTGATATCAACCTTGCGAATTCTACTTACATTGCATCCACTTTCCCAAACCAAACCAAAAGCTACGTGGTCAATGGTGTAGCCGTTCGTGGCTATTTTTCTCTGGATTACACCCGCAAGGACCTTTCCAATGTTGTCTTAACTCAGGGAGTATACTCTCGTTCCAACCTGTTCGATGGAAACAGTTTTCCAATTCTTACTATTGATGATTTAGGTACATTAAACCAAAAACCAAAAGGAATATGGTTGAATATTCAGCATGATAATTTCTACGCACAGCACAATTTGAGTATGAGAAACACTGTGCTTTCAGCTTCTAGAAGATTGGTTTTCAGTTATATCTCATCACCTGAGGCTGGTTTTCTGAAAAGTATAGCATCACGCTTCAACCCAAAAACAACAAAACTGATCTTCAGGTTTATGGAACAGAGTGACATAGATCCATCAACCAATCAGACTTATGGTTCGCTTTTAAAGAATCTTACATCTATCAAGACATTTGCCTCTGGAATTCTTGTTCCAAGGCGATATATATGGCCTGTTGATGCAACTCTTTATCTACAACCACATACATCTTTGGTCTCGGATGCACATAAAGTGGGGCTGGAAGTTTTTGCATCAGATTTTGTGAATGATGTTCCAGCTAGCTTTAATTACAGTTATGATCCTCTTGCCGAGTACCTCCAATTCATAGACAATGGTGACTTCTCTGTTGATGGTGTGCTGTCTGATTTTCCCGTAACCGCATTTGAAGCTATAGGTTGCTTTGCTCACCTAGGCAACAATGCTACAAAAACAGATAAAACTTTGATTATCTCAAAATATGGAGCAAGTGGAGATTATCCTGCTTGTACTGACTTGGCATATAATAATGCCATATCTGATGGTGTGGATGTTCTTGACTGTCCTGTTCAAATTTCCAAGGAAGGAACACCATTTTGCTCAAACTCCATTGATCTTATAGAGAGTACTTTAGTCGCCCAATCAAGCTTCAGCAAACTTGCCATGAGTATCCCTGAGATCAAATCTGGCAGTGGCATATTTTCATTCAGCTTGTCGTGGACTGATATAAAAGGCTTGACCCCTTCAATATTGAACCCTTATGCAAAATACAGATTGTTCAGGAATCCAAAATATAAGAACGAGGGGAAATTGTTGACGTTATCAGATTTCTTGTCTTTAACAAAAAATCAGACTTCTCTATCAGGTGTTGCAATCACTGTTGAGAATGCAGCCTATCTTGACAAGCAAGGATTAAATGTGATTGATGCAGTCATGAGTGCTTTGAGCAAAGCAGGTTATGATAAACCAGGACCCCAAAAGGTTTATATTCAATCCACCAATAGCTCTGTACTGCAGAAGTTCAAGGAGAAAACCAGTTATGAGCTTGTCTACAAGATTGACGAGACTGTTGGTGATGCGGCTAATGCAGCTATTACGGACATAAAAAGCTTTGCTAGTTCTGTGATTGTGAGCAAGGATTCTGTATTTTCTAGTAGCAGTAAATTCCTGACAAGCACTACGAACACTGTGAAAAAGCTGAAGGCTGCTAACCTCTCAGTTTTCGTAGAAACATTCAGCAATGAGTTTGTGTCTCAAGCATGGGATTTCTTCTCAGATGCAACTGTTGAGATCAACTCATTCATTCAGGGAGTACCAATAGATGGTATCATCACAGACTTCCCTAAAACTGCTAACAGATACAGAAGGAACAAATGCTTAAATTTGGGAAGAAATAATACACCTACTTATATGGAAGCTGTTCAACCAGGTGGTCTTTATGGACTGATTACCAAAGAATTCTTGCCTCCAGCTGAGGCTCCACTCCCACCTTTAACAGAAGCTGAAGTGGCAGAGCCACCTTTGCCTCCGGTTGCTAAAATAGACCCTGCTTCGAGCCCAAACACTGGAACCAATGCACTTCCACCTGGCAATGCACAGGCCAAGGTCACTGTCTGCCTCTTCTTGTCCACTCTGGCTCTGTTTATAGCTTCTTCTCTTGTGCTTTGA 2283 0.4052 MWNPRALYSPLALPLLLLLLLHFLLALVSAQRSVWNTLNGVAPVVVARGGFSGIFPDSSDGAYNLAVITSGPDVYVSCDVQLTKDGVGICLPDINLANSTYIASTFPNQTKSYVVNGVAVRGYFSLDYTRKDLSNVVLTQGVYSRSNLFDGNSFPILTIDDLGTLNQKPKGIWLNIQHDNFYAQHNLSMRNTVLSASRRLVFSYISSPEAGFLKSIASRFNPKTTKLIFRFMEQSDIDPSTNQTYGSLLKNLTSIKTFASGILVPRRYIWPVDATLYLQPHTSLVSDAHKVGLEVFASDFVNDVPASFNYSYDPLAEYLQFIDNGDFSVDGVLSDFPVTAFEAIGCFAHLGNNATKTDKTLIISKYGASGDYPACTDLAYNNAISDGVDVLDCPVQISKEGTPFCSNSIDLIESTLVAQSSFSKLAMSIPEIKSGSGIFSFSLSWTDIKGLTPSILNPYAKYRLFRNPKYKNEGKLLTLSDFLSLTKNQTSLSGVAITVENAAYLDKQGLNVIDAVMSALSKAGYDKPGPQKVYIQSTNSSVLQKFKEKTSYELVYKIDETVGDAANAAITDIKSFASSVIVSKDSVFSSSSKFLTSTTNTVKKLKAANLSVFVETFSNEFVSQAWDFFSDATVEINSFIQGVPIDGIITDFPKTANRYRRNKCLNLGRNNTPTYMEAVQPGGLYGLITKEFLPPAEAPLPPLTEAEVAEPPLPPVAKIDPASSPNTGTNALPPGNAQAKVTVCLFLSTLALFIASSLVL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01990 760 Pfam Glycerophosphoryl diester phosphodiesterase family 367 655 IPR030395 GO:0006629|GO:0008081
Cca05g01990 760 Pfam Glycerophosphoryl diester phosphodiesterase family 50 337 IPR030395 GO:0006629|GO:0008081
Cca05g01990 760 ProSiteProfiles GP-PDE domain profile. 360 660 IPR030395 GO:0006629|GO:0008081
Cca05g01990 760 SUPERFAMILY PLC-like phosphodiesterases 359 660 IPR017946 GO:0006629|GO:0008081
Cca05g01990 760 SUPERFAMILY PLC-like phosphodiesterases 43 343 IPR017946 GO:0006629|GO:0008081
Cca05g01990 760 ProSiteProfiles GP-PDE domain profile. 43 344 IPR030395 GO:0006629|GO:0008081
Cca05g01990 760 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 17 758 - -
Cca05g01990 760 Gene3D Phosphatidylinositol (PI) phosphodiesterase 359 659 IPR017946 GO:0006629|GO:0008081
Cca05g01990 760 Gene3D Phosphatidylinositol (PI) phosphodiesterase 42 344 IPR017946 GO:0006629|GO:0008081
Cca05g01990 760 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 17 758 - -
Cca05g01990 760 CDD GDPD_SHV3_repeat_1 43 343 - -
Cca05g01990 760 CDD GDPD_SHV3_repeat_2 361 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01990 Cca-Chr5 39796716 39803227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01990 5 760 Receptor kinase-like Gene Family AT4G26690 54.462 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01990 - - gmx:100811399 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01990 05 39796716 39803227 Cca05g01990 05 39796716 39803227 ECH
Cca05g01990 05 39796716 39803227 Cca09g01149 09 32780437 32783916 PCT