Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01138 ATGGCACCCTCTATTATTTTCTCTCTGCTTTCCCTTCTGTTGGTTCCAACAAGTGGTTATGTGCAGCCCCCTGAAGAGGGTTTCATCTCTGGGGTCATATCTGACAAGGGTCTTGATTATGCCAAGGAGTTGCTGATAGAGAAGGGTATTGCCTCCATTGTGATGCTTCAGCTGCCAGAGATTGAGAATTCTGCCCAAGTCCCTTTTGTTGGAAACGCTAAAGTGGTTCTTTCTGACATCACAATCAAGGATGTTCTAGTCAATTCTTCATCTGTTAAGACTGGAGAGAGTGGTGTTGTTGTAGCTGTTTCAGGTGCCACTGCCAATTTGAGTATAAGGTGGAGGTACTCTGTCAGCTCTTGGTTAATCCCAATTGGAATTTCAGATAGTGGGAATGCTTCAGTAGAGGTTACAGGTATGCAAGTGGGACTTACAGTAAATTTAAGGAACCAAGAAGGATCTCTAAAGTTAACTCTCTTAGATTATGGATGTTATGTGGGAGACTTATCTATAAAGTTGGATGGTGGGGCATCTTGGCTTTACCAACTGCTAGTAGATGCTTTTGAAGGGAATATAGCATCTGCAGTTGAAGAGGCAATTTCAGAGAAAATAAGAGAAGGAATAGAGAATATTGACAATTTATTGCAATCTATTCCAAAGCAGATCTCACTAGACAAAACCTCTGCACTAAATGTTTCTTTTGTCGGCAATCCTGTGTTGAGTAATTCCTCTATTGCAATTGCAATTAATGGCTTATTCACAGGGAAAAATGAAGCTTCAGTACTTCAAGGTTACCAGAAAGGATTGAAGATTTCTTCTGCCTGTGGTGGTTTACCAAAGATGATAAAGCTTTCAATACATGAAAATGTGTTCAAATCTGCCTCCCTGGTTTACTACTATGCAGGTAAAATGCAATTGATTATTGATGAACTGCCTGATCAGGCCATTTTGAACACTGCTGAATGGAGATTCATAGTTCCCCAATTATACAAGCGATATCCAAATGATGACATGCAGCTTAATATCTCTGTATCTGCGACACCATTTATACAAGTGACCTACCAACATGTTGCTGCAACTATTTTTGTAGATATAACAATTAATGTTTTGGAAGACGGCGAGGTCATACCTGTTGCATGCATCTCAGTGGTATGCTAA 1158 0.4007 MAPSIIFSLLSLLLVPTSGYVQPPEEGFISGVISDKGLDYAKELLIEKGIASIVMLQLPEIENSAQVPFVGNAKVVLSDITIKDVLVNSSSVKTGESGVVVAVSGATANLSIRWRYSVSSWLIPIGISDSGNASVEVTGMQVGLTVNLRNQEGSLKLTLLDYGCYVGDLSIKLDGGASWLYQLLVDAFEGNIASAVEEAISEKIREGIENIDNLLQSIPKQISLDKTSALNVSFVGNPVLSNSSIAIAINGLFTGKNEASVLQGYQKGLKISSACGGLPKMIKLSIHENVFKSASLVYYYAGKMQLIIDELPDQAILNTAEWRFIVPQLYKRYPNDDMQLNISVSATPFIQVTYQHVAATIFVDITINVLEDGEVIPVACISVVC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01138 385 Gene3D - 36 212 - -
Cca09g01138 385 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 242 IPR017943 GO:0008289
Cca09g01138 385 Pfam LBP / BPI / CETP family, N-terminal domain 37 210 IPR017942 GO:0008289
Cca09g01138 385 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 383 - -
Cca09g01138 385 Gene3D - 213 385 - -
Cca09g01138 385 PANTHER OS06G0309200 PROTEIN 1 383 IPR045897 -
Cca09g01138 385 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 276 383 IPR017943 GO:0008289
Cca09g01138 385 Pfam LBP / BPI / CETP family, C-terminal domain 280 369 IPR001124 GO:0008289
Cca09g01138 385 SMART bpi1_3 33 258 IPR017942 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01138 Cca-Chr9 32584054 32591728 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01138 K05399 - gmx:100815362 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01138 09 32584054 32591728 Cca09g01138 09 32584054 32591728 ECH
Cca09g01138 09 32584054 32591728 Cca05g01981 05 39693663 39698910 PCT