Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01981 ATGGCAACCTCAATTTGCTTTGTTCTTCTATCCCTTCTGTTCCTTTCAACATCCACAAGGGGTGATCTCCAACACCATGAAGAGGGTTTCATCTCTCTGGTCATATCTGATAAGGGCCTTGATTTTGCCAAGGATTTTCTGATACAAAAAGCTGTTGCCTCTATTGTTGTGTCTCAACTGCCAGAGATTGAGAAAACTGTGCAAGTCCCTCTTGTTGGGAAAGCCAAAGTGGTTCTTTCTGACATCACAATCAATGATATCAAAGTTAATTCTTCGGTGGTTAAAACAGGAGAGGCAGGCATTGTTCTTGTTGTTTCTGGTGCCACTGCCGACTTAAGTTTGAAGTGGAGGTACTCTGTTAGCAGTTGGTTAGTCCCTATTGGAATTTCGGACAGTGGAACTGCCACTGTGAAGGTTAATGATTTGCAAGTGGGACTTACTGTAAATTTAAGGAACCAAAAAGGAACTCTTAAGTTGATTCTCCTGGATTATGGATGTCAAGTTGGAGATTTATCTATAAAGTTGCACGGTGGAGCAGCTTGGCTTTATCAAGTGCTAGTAGATGCTTTTGCAGGAAATATAGCGTCTGCAGTTGAAGAGGCAATCTCTAAGAAAATAAATGAGGGGATATCAACTCTTGACTATTTATTGCAATCTCTTCCAAAGACAATCGCATTAGACAAAACTGCTGCTCTAAATATTTCTTTTGTGGACAATCCCGTGCTGAGTGATTCTGCTATTGAATTAGAAATCAATGGTTTATTCACAGGGAGAAATGATGTTTTGGTACCTCAAGGTTACCACAGAGGATCAGACATTTCTGTTTCTGGTGGCGACCATTCACCAAAGATGATAACGATTTCATTACATGAAAATGTTTTCAAATCTGGTTCCTTGGTTTACTTCACTGCGGATAGTATGAAATGGATTGTTGATGAACTACCTGATCAAGATCTTTTGAACACTGCTGAATGGAGATTCCTTATTCCTCAATTATACAAGCAATATCCAAATGATGACATGAATCTTAATATTTCCATATCTTCTCCACCGGATATACAAGTGACAAAAAAAGATGTTGGTGTCAACATTATAATAGATATAATAATTGATGTTCTAGAAGCTGGTGAAGTCATACCTGTTGCATGCATCTCCGTGGATATTAGTGCCTCTTGTGCTGTGGAGATCGTAGGAAACAACCTTGCTGGTCGGCTTAAATTGAGAAAATTTTCCACGTACTTGAAATGGAGTAAAATAGGGAAGCTGCACTTGAATCTGATTCAGTCAGTGACATCAACTATCCTCAAAACCGTCCTCATACCATACCTGAACTCGCAGTTAATGAGGGGAATTCCGCTGCCAATTCTGAATGATTTTGCCCTTGAGAATGCTCGTATATTGTATGCTCCTCCATGGATTACCGTGTGTAGTGATGTTTCCTTCTTAGGAGACTATTATCTCAAACACCAATAG 1473 0.3958 MATSICFVLLSLLFLSTSTRGDLQHHEEGFISLVISDKGLDFAKDFLIQKAVASIVVSQLPEIEKTVQVPLVGKAKVVLSDITINDIKVNSSVVKTGEAGIVLVVSGATADLSLKWRYSVSSWLVPIGISDSGTATVKVNDLQVGLTVNLRNQKGTLKLILLDYGCQVGDLSIKLHGGAAWLYQVLVDAFAGNIASAVEEAISKKINEGISTLDYLLQSLPKTIALDKTAALNISFVDNPVLSDSAIELEINGLFTGRNDVLVPQGYHRGSDISVSGGDHSPKMITISLHENVFKSGSLVYFTADSMKWIVDELPDQDLLNTAEWRFLIPQLYKQYPNDDMNLNISISSPPDIQVTKKDVGVNIIIDIIIDVLEAGEVIPVACISVDISASCAVEIVGNNLAGRLKLRKFSTYLKWSKIGKLHLNLIQSVTSTILKTVLIPYLNSQLMRGIPLPILNDFALENARILYAPPWITVCSDVSFLGDYYLKHQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01981 490 Pfam LBP / BPI / CETP family, N-terminal domain 39 213 IPR017942 GO:0008289
Cca05g01981 490 PIRSF Lipid_binding_protein 2 485 IPR030675 GO:0005615|GO:0008289
Cca05g01981 490 Gene3D - 33 466 - -
Cca05g01981 490 PANTHER OS06G0309200 PROTEIN 1 489 IPR045897 -
Cca05g01981 490 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 246 481 IPR017943 GO:0008289
Cca05g01981 490 SMART bpi2_2 279 484 IPR001124 GO:0008289
Cca05g01981 490 Pfam LBP / BPI / CETP family, C-terminal domain 280 466 IPR001124 GO:0008289
Cca05g01981 490 SMART bpi1_3 35 260 IPR017942 GO:0008289
Cca05g01981 490 Gene3D - 38 218 - -
Cca05g01981 490 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 489 - -
Cca05g01981 490 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 35 243 IPR017943 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01981 Cca-Chr5 39693663 39698910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01981 K05399 - gmx:100804747 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01981 05 39693663 39698910 Cca05g01981 05 39693663 39698910 ECH
Cca09g01138 09 32584054 32591728 Cca05g01981 05 39693663 39698910 PCT