Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01136 ATGGGAGACAATGTTGTAGTGTCCAACATGGAGCTAGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGAGAGGGTAGCTATGCCAACAATTCCCAAGCACAGGCCATACATGCCAAGTCCATGCATCACCTTCTGAAAGAAGCCCTAGATGGAGTTCAACTTCAAGCCCCTAACATCCCCTTTGTGGTGGTGGATTTGGGGTGTTCATGTGGAAGCAACACCATCAATGTGGTGGATGTGATCATCAAACACATCATCAAACGCTATGAGGCCTTAGGATTGGACCCTCCTGAGTTTTCAGCTTTCTTCTCTGACCTTCCTAGCAATGACTTCAACACCCTCTTCCAGCTACTTCCTCCCTTAGCCAACTATGGAGTTAGCATGGAGGAGTGCCTCGCCGCCAACAACCACCGTGCCTACTTTGCCGCCGGCGTCCCCGGCTCGTTCTACCGGAGACTTTTTCCGGCGAGGTTCATTGATGTTTTCCACTCAGCCTTTTCCTTGCATTGGTTGTCTCAGGTGCCAGAACCTGTTATGGACAAGAGGTCAAGTGCTTACAACAAGGGCAGGGTGTTTATCCATGGTGCTAATGAGATCACAGCAAATGCTTACAAAAAACAATTCCAAACTGACTTGGCAAGCTTCTTGAGCTCAAGGTCAGTGGAATTGAAGAGAGGGGGGTCCATGTTTTTGGTTTGCCTAGGCAGAACTTCTGTGGATCCCACAGACCAAGGTGGGGCTGGCCTCCTCTTTGGGTCCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGACTAATCAGCAGTGAGAAAAGAGACAGTTTTAACATTCCAGTTTATGCACCAAGCCTGCAAGACTTCAAGGAGGTGGTTGAAGCTGATGGTTCATTTACCATTAACAAGCTTGAAGTTTTCAAAGGGGGAAGCCCTCTTGTGGTGAACCAGCCAGATGATGATAGTGAAGTAGGGAGGGCCTTTGCTAACAGCTGCAGGAGTGTGTCTGGTGTCCTTGTTGATGCTCACATTGGTGACAAGCTCAGTGAGGAGCTGTTTCTGAGAGTGGAACATAGAGCCACAAGCCATGGAAAAGAGTTATTAGAGCAACTACAGTTCTTTCACATAGTTGCATCCCTTTCTTTTGCTCTATGA 1152 0.4818 MGDNVVVSNMELERLLSMKGGKGEGSYANNSQAQAIHAKSMHHLLKEALDGVQLQAPNIPFVVVDLGCSCGSNTINVVDVIIKHIIKRYEALGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGVSMEECLAANNHRAYFAAGVPGSFYRRLFPARFIDVFHSAFSLHWLSQVPEPVMDKRSSAYNKGRVFIHGANEITANAYKKQFQTDLASFLSSRSVELKRGGSMFLVCLGRTSVDPTDQGGAGLLFGSHFQDAWDDLVQEGLISSEKRDSFNIPVYAPSLQDFKEVVEADGSFTINKLEVFKGGSPLVVNQPDDDSEVGRAFANSCRSVSGVLVDAHIGDKLSEELFLRVEHRATSHGKELLEQLQFFHIVASLSFAL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01136 383 Gene3D Vaccinia Virus protein VP39 30 309 IPR029063 -
Cca09g01136 383 PANTHER INDOLE-3-ACETATE O-METHYLTRANSFERASE 1 8 381 - -
Cca09g01136 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 10 380 IPR029063 -
Cca09g01136 383 Pfam SAM dependent carboxyl methyltransferase 59 379 IPR005299 GO:0008168
Cca09g01136 383 Gene3D - 16 362 IPR042086 -
Cca09g01136 383 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 8 381 IPR005299 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01136 Cca-Chr9 32535714 32540703 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01136 K18848 - gmx:100801476 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01136 09 32535714 32540703 Cca09g01136 09 32535714 32540703 ECH
Cca09g01136 09 32535714 32540703 Cca05g01979 05 39668052 39672580 PCT