Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01979 ATGGCTCCAATGGGAGACAATGTTGTTGTGTCCAACATGGAACTGGAGAGGTTGCTTAGCATGAAAGGAGGCAAAGGAGAAGCTAGCTATGCCAACAATTCCCAAGCACAGGCCATACATGCCAAGTCCATGCTTCATCTTCTGAGAGAAACTCTAGACAGAGTTGAGCTTGTTGAGGGACGTGAGGTGCCATTTGTGGTGGTGGACTTGGGGTGTTCATGTGGAAGCAACACCATAAGTGTTGTGGATGTGATAATAAAGCACATGATGAAGAGGTATGAGGCTTTAGGGTGGCATCCACCTGAGTTTTCAGCTTTCTTCTCAGACCTTCCAAGCAATGACTTCAACACACTGTTCCAACTCCTTCCTCCACTTGCCAACTATGGTGTCAGCATGGAAGAGTGCCTTGCTGCCAACAACCACCGCTCCTACTTCGCCGCCGGAGTCCCCGGCTCCTTCTACCGGAGGCTTCTTCCGGCCAGGTCCGTTGATGTTTTCCACTCAGCCTTCTCTTTGCATTGGCTATCTCAGGTGCCAGAATGTGTAGTGGACAAGAGGTCAAGTGCATACAACAAAGGAAGGGTGTTTATCCATGGTGCTGGTGAGAGCACAGCAAATGCTTACAAGAAACAATTCCAAACAGACTTGGCAGGCTTTCTGAAGGCAAGGTCAGTGGAGATGAAGAGAGAGGGGTCCATGTTCTTAGTTTGCTTGGCCAGAACTTCAGTAGACCCCACAGACCAAGGTGGGGCGGGCCTTCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTGATTAGCCAAGAAAAACGAGACAGTTTCAACATTCCAGTTTATGCTGCCAGCCTGCAAGACTTCAAGGAGGTGGTTGAAGCAAATGGTTCATTTGCCATAGACAAACTTGAGGTATTCAAAGGAGGAAGCCCCCTTGTGGTGAACCAACCAGATGATGCAAGTGAAGTAGGAAGGGCTCTAGCCAATAGCATTAGGACAGTGTCTGGAGTACTTGTTGATGCTCACATTGGTGACAAACTAAGTGAGGAGCTTTTTCTTAGAGTGGAGCACCGAGCCACTTTTCATGCCAAAGAGCTATTAGAGCAACTACAGTTCTTTCACATAGTTGCATCCCTTTCTTTTGCTCAATGA 1164 0.4811 MAPMGDNVVVSNMELERLLSMKGGKGEASYANNSQAQAIHAKSMLHLLRETLDRVELVEGREVPFVVVDLGCSCGSNTISVVDVIIKHMMKRYEALGWHPPEFSAFFSDLPSNDFNTLFQLLPPLANYGVSMEECLAANNHRSYFAAGVPGSFYRRLLPARSVDVFHSAFSLHWLSQVPECVVDKRSSAYNKGRVFIHGAGESTANAYKKQFQTDLAGFLKARSVEMKREGSMFLVCLARTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLISQEKRDSFNIPVYAASLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNQPDDASEVGRALANSIRTVSGVLVDAHIGDKLSEELFLRVEHRATFHAKELLEQLQFFHIVASLSFAQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01979 387 Pfam SAM dependent carboxyl methyltransferase 63 383 IPR005299 GO:0008168
Cca05g01979 387 PANTHER INDOLE-3-ACETATE O-METHYLTRANSFERASE 1 11 385 - -
Cca05g01979 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 384 IPR029063 -
Cca05g01979 387 Gene3D - 19 367 IPR042086 -
Cca05g01979 387 Gene3D Vaccinia Virus protein VP39 33 313 IPR029063 -
Cca05g01979 387 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 11 385 IPR005299 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01979 Cca-Chr5 39668052 39672580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01979 K18848 - gmx:100807953 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01979 05 39668052 39672580 Cca05g01979 05 39668052 39672580 ECH
Cca09g01136 09 32535714 32540703 Cca05g01979 05 39668052 39672580 PCT