Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01135 ATGGCGGTGACAGATGCTCAAAATCCTCTTCTTGCTGAACATACTTGTGGTTCCTTGTTAAATAAGTTGCAGGAAATATGGGATGAGGTTGGTGAGAGCGACGAGGAGCGAGATAAGATGCTCCTTCAGATAGAGCAAGAATGCTTGGATGTGTACAAAAGAAAGGTTGAGCAGGCTGATAATTCTAGGGCACATCTACTTCAATCCTTGTCTGATGCTAAGATTGAGCTTTCTAGTCTTCTATTGGCTCTTGGTGAAAACAACTTCATGGAAATGCCTGACAAGACTTCAGGGACTATTAAGGAACAACTTGAATCCATAGCACCAATACTGGAACAGTTATGGCAACAAAAAGAGGAGAGAATAAAAGAGTTTTCAGATGTACAGTTACAGATCCAAAAAATATGTGCAGAGATAACTGGGGACTTGAACCCTGAGCAGGCAGGAACATTTGCAGTTGACGAGTCTGACCTGTCCTTGAAGAAGTTGGATGAATATCAATCCCAACTCCAAGAACTTCAAAGGGAAAAGAGTGAGAGGTTGCACAAGGTTCTTGAATATGTGAGTACTGTGCATGATCTTTGTGCTGTCCTTGGCATGGACTTCTTCAGCATTGCCACTGAAGTTCATCCAAGCTTAAATGAGTCTATTGGTGTTCATTCCAAAAGCATAAGCAATGGCACACTAGCTAAACTGGTTAAGACAGTCTCAACATTGAAAGAAGATAAAAAGCAGAGGCTACACAAGCTCCAAGAATTAGCTTCTCAGTTAATTGATCTGTGGAATCTAATGGACACCCCTACAGAGGAAAGGAGACTATTTGACTATGTTACTTGTAATAAGTCAACTTCGGTGGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTAATCATGCTGAAGTGGAAGTTGAAAGGCTTGATCAGCAGAAAGCTAGCAGGATGAAAGAAATTGCTCTCAAGAAGCAAGACGAGCTTGAAGAGATATATGCCTGTGCTCATATCGAAATAGACCCTGAAGCTGTTCGAGGGAAGATTTTGTCACTGATTGAATCTGGAAACACTGAACCAGCTGAACTACTGGCTGACATGGACAAACAGATAGCTGCAGCGAAAGAAGAAGCTTTAAGCCGAAAAGACATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGATGACTATAATAGGGATGAAAACAGGTATAATGCAAGTAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTGAACAAAATTCCAGCTTTGGTTGATACATTGGTTGCTAAAACTCGTGCTTGGGAAGAAGTACATGACATGTCATTTACATACGATGGTGTTCCTCTTCTTGCTATGTTGGATGAATATGCTATGCTCAGGCATGAACGGGAAGAGGAAAAACGAAGGATGAGGGACCAGAAAAGGTACCATGAGCAGCAAAGCACAGAACAAGAATCTGTGTTTGGTTCAAGACCTAGCCCTGCAAGGCCACTTGGCAACAAGAAGGTAGTTGGCCCTCGTCCCAATGGTACTCCTAACCGACGGCTATCTCTTAATGCTCACCAAAATGGAAGCAGATCCATAACAAAAGATGGAAAACGGGATAATACTAGACCAGTTGCTACCCTTAACTATGTATCAGTATCAAAAGAAGATGCTGCTTCCCATGTTTCTGGTACTGAACCAGTACCAACATCACCCTAG 1743 0.4246 MAVTDAQNPLLAEHTCGSLLNKLQEIWDEVGESDEERDKMLLQIEQECLDVYKRKVEQADNSRAHLLQSLSDAKIELSSLLLALGENNFMEMPDKTSGTIKEQLESIAPILEQLWQQKEERIKEFSDVQLQIQKICAEITGDLNPEQAGTFAVDESDLSLKKLDEYQSQLQELQREKSERLHKVLEYVSTVHDLCAVLGMDFFSIATEVHPSLNESIGVHSKSISNGTLAKLVKTVSTLKEDKKQRLHKLQELASQLIDLWNLMDTPTEERRLFDYVTCNKSTSVDEVTVPGALALDLINHAEVEVERLDQQKASRMKEIALKKQDELEEIYACAHIEIDPEAVRGKILSLIESGNTEPAELLADMDKQIAAAKEEALSRKDILDKVEKWMSACEEESWLDDYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEVHDMSFTYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKRYHEQQSTEQESVFGSRPSPARPLGNKKVVGPRPNGTPNRRLSLNAHQNGSRSITKDGKRDNTRPVATLNYVSVSKEDAASHVSGTEPVPTSP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01135 580 Coils Coil 240 260 - -
Cca09g01135 580 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 507 - -
Cca09g01135 580 MobiDBLite consensus disorder prediction 525 539 - -
Cca09g01135 580 MobiDBLite consensus disorder prediction 553 580 - -
Cca09g01135 580 MobiDBLite consensus disorder prediction 477 580 - -
Cca09g01135 580 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 1 5 580 - -
Cca09g01135 580 Coils Coil 299 319 - -
Cca09g01135 580 Gene3D - 370 503 - -
Cca09g01135 580 Coils Coil 462 482 - -
Cca09g01135 580 Coils Coil 156 183 - -
Cca09g01135 580 MobiDBLite consensus disorder prediction 477 494 - -
Cca09g01135 580 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 5 580 IPR007145 GO:0000226|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01135 Cca-Chr9 32521298 32528157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01135 13 545 EF-hand Containing Proteins AT5G62250 40.183 9.17e-114 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01135 K16732 - qsu:112012954 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01135 09 32521298 32528157 Cca09g01135 09 32521298 32528157 ECH
Cca09g01135 09 32521298 32528157 Cca05g01976 05 39653302 39657306 PCT