Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01976 ATGGCAGTGACAGAAGCTCAAAATCCTCTTCTTGGAGAAAACACATGTGGTTCCTTGTTAAAAAAGCTGCAGGAAATATGGGATGAGGTTGGTGAGAGCGATGAGCAACGAGACAAGATGCTTCTTCAGTTAGAGCAGGAGTGTTTGGATGTGTACAAGAGAAAGGTTGAGCAGGCTGCGAAGTCAAGGGCACAGCTACTTCAAGCTTTGTCTGATGCTAAGCTTGAGCTTTCTAGTCTTCTATCAGCACTTGGCGAAAAGAGCTTTGCTGGAATTCCTGATAACACCTCTGGAACTATCAAAGAACAGCTTGCAGCTATAGCACCAGTACTTGAACAATTATGGCAACAAAAGGAAGAAAGGATTAAGGAGTTCTCAGATGTCCAGTCACAGATCCAACAAATATGTGGAGAGATAGCCGGGAACTTGAACCTTAATGAGGTTTCACCTGCAGTTGACGAGTCTGACCTGTCCCTAAAGAAGTTAGATGAATATCAATCTGAGCTCCAAGAACTTCAAAAGGAAAAGAGCGACAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTAAGTACTGTAACTGAGGTTCATCCAAGCTTAAATGATTCCACTGGTGTTCAATCCAAGAGCATAAGTAATGACACCCTAGCTAGGCTGGCTAAGACTGTGTTGACACTGAAAGAAGATAAAAAACAGAGGCTGCACAAGCTCCAAGAATTAGCTTCTCAATTAATTGATCTTTGGAATTTAATGGATACTCATCCAGAGGAAAGGAGCCTATTTGATCATGTTACCTGTAACATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATTTGATTGAGCAGGCTGAAGTGGAAGTTGAGAGACTTGATCAGCTGAAAGCCAGCAGGATGAAGGAAATTGCTTTCAAGAAGCAAGCAGAACTCGAAGAGATATTTGCCCGTGCTCATATAGAAATAGATCCAGATGCTGCTCGGGAGAAGATTATGGCATTGATTGATTCAGGAAACGTTGAACCAGCTGAATTACTGGCTGACATGGACAATCAGATAGCAAAAGCAAAAGAAGAAGCTTTAAGCCGAAAAGATATATTGGACAAGGTTGAGAAATGGATGTCAGCATGTGAAGAAGAGAGTTGGCTTGAAGACTATAATCGGGATGAAAACAGGTACAATGCAAGCAGAGGTGCACACTTGAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAATAAAATTCCAGCTTTGGTTGATACATTGGTTGCTAAAACTCGTGCATGGGAGGAAGATCATGGCATGTCATTTGCATATGATGGTGTCCCACTTCTAGCCATGTTAGATGAATATGCCATGCTCAGGCATGAACGGGAAGAAGAAAAACGGAGGATGAGGGATCAGAAGAAGCATCACGAGCAGAGGAACACAGAACAAGAAGCCATCTTTGGTTCAAGACCCAGTCCTGCTAGACCAGTTAGTTCCAGTAAGGTAGGAGGTCCTCGTACTAATGGAGGAGCCAATGGTACTCCTAACCGACGGCTATCGCTTAATGCTCATCAAAATGGAAGCAGGTCCACATCAAAAGATGGAAAAAGGGATAATACCAGACCAGTTGCTCCCGTGAATTATGTGGCCATAACGAAAGAAGACGCTGCTTCCCATGTTTCTGGTACTGAACCCATCCCGGCATCACCCTAA 1752 0.4366 MAVTEAQNPLLGENTCGSLLKKLQEIWDEVGESDEQRDKMLLQLEQECLDVYKRKVEQAAKSRAQLLQALSDAKLELSSLLSALGEKSFAGIPDNTSGTIKEQLAAIAPVLEQLWQQKEERIKEFSDVQSQIQQICGEIAGNLNLNEVSPAVDESDLSLKKLDEYQSELQELQKEKSDRLHKVLEFVSTVHDLCAVLGMDFLSTVTEVHPSLNDSTGVQSKSISNDTLARLAKTVLTLKEDKKQRLHKLQELASQLIDLWNLMDTHPEERSLFDHVTCNMSASVDEVTVPGALALDLIEQAEVEVERLDQLKASRMKEIAFKKQAELEEIFARAHIEIDPDAAREKIMALIDSGNVEPAELLADMDNQIAKAKEEALSRKDILDKVEKWMSACEEESWLEDYNRDENRYNASRGAHLNLKRAEKARILVNKIPALVDTLVAKTRAWEEDHGMSFAYDGVPLLAMLDEYAMLRHEREEEKRRMRDQKKHHEQRNTEQEAIFGSRPSPARPVSSSKVGGPRTNGGANGTPNRRLSLNAHQNGSRSTSKDGKRDNTRPVAPVNYVAITKEDAASHVSGTEPIPASP 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01976 583 Coils Coil 461 492 - -
Cca05g01976 583 Gene3D - 368 502 - -
Cca05g01976 583 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 4 583 IPR007145 GO:0000226|GO:0008017
Cca05g01976 583 Coils Coil 239 259 - -
Cca05g01976 583 MobiDBLite consensus disorder prediction 506 542 - -
Cca05g01976 583 MobiDBLite consensus disorder prediction 476 496 - -
Cca05g01976 583 PANTHER MICROTUBULE-ASSOCIATED PROTEIN, MAP65/ASE1/PRC1-RELATED 4 583 - -
Cca05g01976 583 Coils Coil 298 318 - -
Cca05g01976 583 MobiDBLite consensus disorder prediction 476 583 - -
Cca05g01976 583 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 506 - -
Cca05g01976 583 Coils Coil 155 182 - -
Cca05g01976 583 Gene3D - 153 209 - -
Cca05g01976 583 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01976 Cca-Chr5 39653302 39657306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01976 13 520 EF-hand Containing Proteins AT5G62250 43.870 9.21e-126 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01976 K16732 - gmx:100806071 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01976 05 39653302 39657306 Cca05g01976 05 39653302 39657306 ECH
Cca09g01135 09 32521298 32528157 Cca05g01976 05 39653302 39657306 PCT