Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01109 ATGGATGCTCACGCCACTTCCTTCGTCTCCAAAGCGCGAACCGCCTTCCATTCCGCTGCTGCCAAAGCCGAGCGTGTTCTCCACGAATTCAAAATCGATCGAGATTCTGAGAAGCAATTGCACGACGATTGCGGGAGGCGGCGCGGAGATGAATCTGCTCGGAGTGAGAACGAGTCAAAGTTCCTCAATGAACTGAAGCATATAAAGTGGAGACCTCCGCATATAGGAATAAAGCAGGACTGGCAAGATAGAATTAACAACATGCGAAAAGGGAGAAAAGAAGTCAAAGTAACAGATAAAGTTGGCATTATAAATATGGACTCTGTTCCATTTGATGATGAAAATTTGTACATTCTCAATGTGAAAAATGATCTTGATGCCAAGGCTTCAGAAGCAATTCATTCGCTTGAAGGCTTAACTGCTGTGACTGAACATCCCATTCCTCCATCGTCTGTCCTGAAGCAGTTGGCTATGGCTTTTGAGGTTGGAAGGAAAACAAACTCAATGAAAGATTTGGTAGCTTCATCAGGAGGTTCGTCACCTGCCAGAGACAGGGCAGGTTTAAGTCTCTCTGCTGTGAAGGCTTTAGTGTTGCGTGAAAAAGAGGACAAACTTACCTCTGATTTTAGTAGCAATGAAAAAGTGGTGTATTTGATTAATTCATTGTTTGATCCAGAGGGACAGTTCCTTAGAAGGAAGACCAACTCTGATCCAGAGGAAACTTCCATATCATATTTGCCAAGAGATATTCATGGTGCTCCTCCTGAAAGCCTAGTTGTTAAGCTAGCTGAAATAATTGGAAACTTCAAGACGCTTCGAGAAATGGCTCTTTTTTGGTGCAGTGTTGTTGCTGAACTGAGAAAACATTGGTCTGAAGAAAAATATTTACCTGGAGTCCCCCCAGATGACTTTCCAGATCTGAAGTCATGTCTTCTGTTTCAACAATTTCAAGTAATTAATTGTTGCATCTCTCGGAAAAGGCGGCATATTATTGCCACTGAATCTCTAGACTCTATGGTGATGGAAGCCAATTCAAATACGCTAGAATCAACAAATTACAGAGACAAAATTCCTGCAGGCCCTTTATTATATGCAAGATTAAGGACTGGAGAGCTTGTTCTCCGGCTTGGTGCTGATTGCCCATCCGGAGATCTGATGTTACTGGAAACTGGCGAGCCTACATACTCTCCTGTAACTCAGGAGGGACCCTTGCTTACAGAAGATCTGATCAAAGAGACAGAGGAGTTTGTGCTGCGGACAGGGAGTCTTGGTGCTGGGTGCTCTCAACTGCTCTCTGATATGCAGGCTTTCAAGGCTGCGAATCCTGGTTGCATTTTGGAAGATTTTGTGAGATGGTACTCTCCTCCTGATTGGACTGAAAGTGAGGAAAGTCCCAAGGATAGAGATTCTTTTTATGGTGGTGAGTCAATGTCTGCCAGAGGTCAACTAAGTCTGCGAATGCAAAAAGAAGGTAACTTGTGGCGTGAATTATGGGAAACATCTAAACCAGTTCCAGCTGTTAAACAGGCACCTCTCTATGATGAGGATTTGGCAGTGGAGGACATCCTAGATACATTTGAGGACATCCTGCCTTCGGAGCTTTTTGGACAACTGTTTGTTTCACTTCTCGGTTCAGGATTTGCAATTGCTGAAAATGAAATTATGCTGTCTGCTAACATTGACTTATCGAAGTTGTTCAATGACTGCAAGGAGTACATAGTTACCACCTGTCAAAGCAACAAATTCAATGAGAAAGTCGATGAACTTGTTCAGATGTATGAAATGGTGGAGACAATGTTGTTGAATCCAGATGAGGCATTGAAGACGATGAATCACCTGGAAGAATCAACCATGACTACCAGTGAAACAAAGCGTCGGTTGTGTACCGGTGAACCAAAACACCAGTTTAAGAGACTTAACCATATCTTTGGTGGCAAAGATAAACTATTGACAAGGCCTGTCTGGAAAGATGAGGTAAATGAAGAAGAAAAGCCGAGTCGACATTCTTTTTCAAGTTTCCTTGACAGCAAGTCATCTTTATTTTCAAAGAAGCCTCCTAAGCCTGGAAACCTATACCCTTCTGAGCATCCTTCCTTTCTGGAACGTGATTGGACGATTGTTTAA 2124 0.4294 MDAHATSFVSKARTAFHSAAAKAERVLHEFKIDRDSEKQLHDDCGRRRGDESARSENESKFLNELKHIKWRPPHIGIKQDWQDRINNMRKGRKEVKVTDKVGIINMDSVPFDDENLYILNVKNDLDAKASEAIHSLEGLTAVTEHPIPPSSVLKQLAMAFEVGRKTNSMKDLVASSGGSSPARDRAGLSLSAVKALVLREKEDKLTSDFSSNEKVVYLINSLFDPEGQFLRRKTNSDPEETSISYLPRDIHGAPPESLVVKLAEIIGNFKTLREMALFWCSVVAELRKHWSEEKYLPGVPPDDFPDLKSCLLFQQFQVINCCISRKRRHIIATESLDSMVMEANSNTLESTNYRDKIPAGPLLYARLRTGELVLRLGADCPSGDLMLLETGEPTYSPVTQEGPLLTEDLIKETEEFVLRTGSLGAGCSQLLSDMQAFKAANPGCILEDFVRWYSPPDWTESEESPKDRDSFYGGESMSARGQLSLRMQKEGNLWRELWETSKPVPAVKQAPLYDEDLAVEDILDTFEDILPSELFGQLFVSLLGSGFAIAENEIMLSANIDLSKLFNDCKEYIVTTCQSNKFNEKVDELVQMYEMVETMLLNPDEALKTMNHLEESTMTTSETKRRLCTGEPKHQFKRLNHIFGGKDKLLTRPVWKDEVNEEEKPSRHSFSSFLDSKSSLFSKKPPKPGNLYPSEHPSFLERDWTIV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01109 707 MobiDBLite consensus disorder prediction 666 696 - -
Cca09g01109 707 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 5 707 IPR045700 GO:0005096|GO:0043547
Cca09g01109 707 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 5 707 - -
Cca09g01109 707 Pfam Rab3 GTPase-activating protein catalytic subunit 375 527 IPR026147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01109 Cca-Chr9 32130801 32143876 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01109 K18270 - gmx:100800515 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01109 09 32130801 32143876 Cca09g01109 09 32130801 32143876 ECH
Cca09g01109 09 32130801 32143876 Cca05g01947 05 39278809 39289865 PCT