Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01947 ATGGAGGAGCTGACTTTTGTGTCGAAAGCGAGGACCGCCTTCCATTCCGCGGCGGCGAAAGCGGAGCGCGTTCTCTTGGATTTCAAATCCGATCGAGATCACGACAAGCAATCGCCTAATAGCTTCGCACGGCAATCACCGGAGGCTGAATCTCACAACAACGAAAACGAGTCCAAGCATCGCAGTGAATTGAAGCATATAAAGTGGAGGCCTCCACATATAGGAATAAAGCCAGATTGGCAAGATAGAATAAAGAACATTCGGAGAGGGAGAAAAGAAGTTGAAGATACAGATAAAGTTGGGGATCCGAACATGGCGGTTCCATTTTATGATGAAAATTTGTACATATTGAATGTGAAGAATGATATTGAGGCCAAGGCTTCAGAAACAATTCCCTCAGTTGAAGGCCTAACTGCTGCGACAAAAGATCCCATTCCTTCATCATCAGTGCTGAAGCAATTGGCTATAGCTTTTGAGGCTGGAAGTAGAGCGAAATCAATGAAAGAATTTATAGCTTCATCAGGAGGTTCTTCACCTGCTAAAGAGAGGGCTGGCTTAAGTCTCTCTGCAGTTAAGGCTTTAGTAATACGTGAAAAGGAGGACAAAATTACCTCTGAGTTCGCTGACAATGAGAAAGTTTTGCATTTAATTAATTCTCTGTTTGATTCAGAGGGAGATTTCCTGAGCAGAAATATCAACTCTAAGCTTGACAAAACAGCCATGACATCTTTTCCGAGAGATATTCATGGTGCTCCTCCTGAAAGCCTTGTTGTTAAGCTAGCTGAAATCCTTGGAAACTACAAGTCTGTCCAAAAAATGGCTATTTTCTGGTGCAGGGTTGTTGCTGAACTTAGAAAACGTTGGTCTGAGGAACAATATTTACCGGGAGTCCCCCAGAATGAGATTCCTGATCTGAAGTCATGTCTTCTGTATCAACAATTACAAGTAATTAATTGCTGCATCTCTCGGAAAAGGCTCCGTAATATTGCCACTGAATCTCTAGACTCTATGTTGATGCAAGCTAATTCAGCCATAAAAGAATCAACTGATTCTAACGCTGGAGCTCCTGCAAGCGCTGTTCTATATGCTAGATTAAATAGTGGGGAGCTTGTTCTTCGACTTGGTGCAGATCGCCTAGCTGGAGATATGACATTGTTGGAAACTGGCGAGCCTGTGTATTCTCCAGTCACCCAGGAAGGACCTTTGCTTACAGAAGATCTAATCAGGGAAACAGAGGAGTTTGTCCTGCGGACAGGGAGTGTTGGCGCTGGGTGCTCTCAACTGCTCTCAGATATGCAGGCTTTCAAGGCTGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGATAATGAGGCATGTGTTGAGGATAGTGATGTTTTTGATAATGGTGAGTCGTTGTCTGCCAGAGGTCAACTAAGTCGGCGAATGCAAAAAGAAGGTAATTTGTGGCGTGAACTCTGGGAAACATCTAAACCAGTACCTGCTGTTAAGCAGGCACCTCTATTTGATGAGGATTTGGCAGTGGAGGGCATCCTCAGTGCATTTGAGGACATCCATCCTTCTGATCTTTTTGGACAGCTGTTTATGTCTTTACTGGGTTTAGGATTTGCAATTGCCGAACCTACGCTGTCTAGTAACAGTGACTTCTCGAAGTTATTCTATGACTGCAAGGAGTACATAATTATCGGTTGTCAATGCAACGACAAGTTGAATGAGAAAGTTGATGATCTTGTCCAGGTATATGAAACAGTGGAGAAAATGTTATTGTATCCTGAAGAAGCACTAAAGATGATTAAGCAGACAGAAGAATCAACTACGATTACTGATGAACCAAAGAGCCCGTTTAAGAGACTTAGCCTTATCTTTGGCGGCAAAGATAAACTATTGAGAAAGTCTGTCACAAAAGATCAGATAAACGATGAAGAAAAACAAGGTCGGCATTCTTTTTCAAGTTTCTTTGACAGCAAATCATCTTTGTTCTCAAAGAAGCTTCCCAAGTCTGGAACCCCATCCCCTTCTAATAAAACTTCTCACGAAACTGGTTGGACAGTTGTTTAG 2085 0.4273 MEELTFVSKARTAFHSAAAKAERVLLDFKSDRDHDKQSPNSFARQSPEAESHNNENESKHRSELKHIKWRPPHIGIKPDWQDRIKNIRRGRKEVEDTDKVGDPNMAVPFYDENLYILNVKNDIEAKASETIPSVEGLTAATKDPIPSSSVLKQLAIAFEAGSRAKSMKEFIASSGGSSPAKERAGLSLSAVKALVIREKEDKITSEFADNEKVLHLINSLFDSEGDFLSRNINSKLDKTAMTSFPRDIHGAPPESLVVKLAEILGNYKSVQKMAIFWCRVVAELRKRWSEEQYLPGVPQNEIPDLKSCLLYQQLQVINCCISRKRLRNIATESLDSMLMQANSAIKESTDSNAGAPASAVLYARLNSGELVLRLGADRLAGDMTLLETGEPVYSPVTQEGPLLTEDLIRETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDNEACVEDSDVFDNGESLSARGQLSRRMQKEGNLWRELWETSKPVPAVKQAPLFDEDLAVEGILSAFEDIHPSDLFGQLFMSLLGLGFAIAEPTLSSNSDFSKLFYDCKEYIIIGCQCNDKLNEKVDDLVQVYETVEKMLLYPEEALKMIKQTEESTTITDEPKSPFKRLSLIFGGKDKLLRKSVTKDQINDEEKQGRHSFSSFFDSKSSLFSKKLPKSGTPSPSNKTSHETGWTVV 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01947 694 MobiDBLite consensus disorder prediction 50 66 - -
Cca05g01947 694 Coils Coil 576 596 - -
Cca05g01947 694 MobiDBLite consensus disorder prediction 669 694 - -
Cca05g01947 694 MobiDBLite consensus disorder prediction 29 66 - -
Cca05g01947 694 Pfam Rab3 GTPase-activating protein catalytic subunit 373 525 IPR026147 -
Cca05g01947 694 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 5 689 - -
Cca05g01947 694 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 5 689 IPR045700 GO:0005096|GO:0043547
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01947 Cca-Chr5 39278809 39289865 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01947 K18270 - gmx:100818643 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01947 05 39278809 39289865 Cca05g01947 05 39278809 39289865 ECH
Cca09g01109 09 32130801 32143876 Cca05g01947 05 39278809 39289865 PCT