Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01101 ATGGTTCAGATCGCCAGGAGGAAGAAGGGGCGGCCGTCGAAGGCCGATCTGGCGCGCCGCTCCGGCGAGGCTCCGGCAGACGCCTCCGCCGCCGCCTCATCGACGCCCGATCTCCGGCGAAGCATCCGGCGCCGGAACGTGAGGTACAACATAATCGATTacgacgacgattacatcgacgacgaggaggacgaGAGGAGGCGCGAGAAGAAGAAGCTCAAGCTCATGGCGAAGCTGAACCAGGGCgaagaagaagaagaggaagagcgagaagaagaTAACGAGGCGGCGCGGAACCGCACTCGCGCCGAGTCGCGTGAGAAGCACGCACCGCAGgaagaagacgacgacgaaaacgaacaagaggaagagaacgaagacgccgaagaagtgcacggagaagacgaagaggaCGTGGCAAAGGGCAGAAAAGTGGAATCGAAAGGGCTCCACTCTGTTTCTGTTTCAGGAACTCCGGTGATTCTTCAATCTGGGATTCCGTTGCCTGATAAGAGGACTCTGGAATTGATACTGGACAAGCTTCAGAAGAAGGACACTTATGGTGTGTTTGCAGAGCCTGTTGATCCTGAAGAGCTTCCTGATTATCACGATGTTATCGATCATCCCATGGACTTTTCCACCGTGAGGAAGAAGTTGGCAAATGGATCTTATACTACCTTAGAACAATTTGAGAGTGATGTATTTTTGATTTGTTCAAATGCAATGCAATACAATGCACCAGAGACAATATACCACAAACAGGCACGATCAATACAAGAACTTGGAAGGAAGAAGTTTGAGAAGTTAAGGCTTGGCTTTGAACGCTCTCAGATGGAGCTGAAATCAGAACCGAAAGCAGGATCTAGTTACTTGGTTAAGAAGCAACCAAAGAAGCCACTGGCACGTGCCTCACAGGAGCCTGTTGGCTCTGATTTCTCCTCAGGGGCAACTCTTGCTACTGTTGCAGACTTACAGCCAACTTCCTATCCAATGCAAGTTGGTAGATGTGAGAGGCCTGGCAATATTGGAGGTATTTTGGAGGCAAATGCTTTCTGGATTGATGCAAATCAAGAGAAATCTGAAGATGTTTTGTCAGGTATCTCAGTAATGAGATCGTGCTATAATCTTTCTTCCCTGTAA 1140 0.4351 MVQIARRKKGRPSKADLARRSGEAPADASAAASSTPDLRRSIRRRNVRYNIIDYDDDYIDDEEDERRREKKKLKLMAKLNQGEEEEEEEREEDNEAARNRTRAESREKHAPQEEDDDENEQEEENEDAEEVHGEDEEDVAKGRKVESKGLHSVSVSGTPVILQSGIPLPDKRTLELILDKLQKKDTYGVFAEPVDPEELPDYHDVIDHPMDFSTVRKKLANGSYTTLEQFESDVFLICSNAMQYNAPETIYHKQARSIQELGRKKFEKLRLGFERSQMELKSEPKAGSSYLVKKQPKKPLARASQEPVGSDFSSGATLATVADLQPTSYPMQVGRCERPGNIGGILEANAFWIDANQEKSEDVLSGISVMRSCYNLSSL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01101 379 Coils Coil 59 100 - -
Cca09g01101 379 ProSiteProfiles Bromodomain profile. 182 252 IPR001487 GO:0005515
Cca09g01101 379 SUPERFAMILY Bromodomain 166 270 IPR036427 GO:0005515
Cca09g01101 379 Coils Coil 118 138 - -
Cca09g01101 379 MobiDBLite consensus disorder prediction 77 151 - -
Cca09g01101 379 MobiDBLite consensus disorder prediction 114 134 - -
Cca09g01101 379 CDD Bromodomain 170 266 - -
Cca09g01101 379 SMART bromo_6 163 271 IPR001487 GO:0005515
Cca09g01101 379 Pfam Bromodomain 176 256 IPR001487 GO:0005515
Cca09g01101 379 MobiDBLite consensus disorder prediction 1 46 - -
Cca09g01101 379 MobiDBLite consensus disorder prediction 93 113 - -
Cca09g01101 379 MobiDBLite consensus disorder prediction 284 313 - -
Cca09g01101 379 Gene3D - 169 286 IPR036427 GO:0005515
Cca09g01101 379 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 368 - -
Cca09g01101 379 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 368 - -
Cca09g01101 379 ProSitePatterns Bromodomain signature. 188 244 IPR018359 -
Cca09g01101 379 PRINTS Bromodomain signature 185 198 IPR001487 GO:0005515
Cca09g01101 379 PRINTS Bromodomain signature 215 233 IPR001487 GO:0005515
Cca09g01101 379 PRINTS Bromodomain signature 199 215 IPR001487 GO:0005515
Cca09g01101 379 PRINTS Bromodomain signature 233 252 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01101 Cca-Chr9 32032598 32036127 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01101 K22184 - gmx:100799986 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01101 09 32032598 32036127 Cca09g01101 09 32032598 32036127 ECH
Cca09g01101 09 32032598 32036127 Cca05g01942 05 39217240 39223406 PCT