Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01942 ATGGGTCAGATCGTGAGGAGGAAGAAGAAAGGCCGTCCCTCCAAGGCAGATCTAGCTCGACGCTCCGGCGAATCTCCGgccgccgcgcagtctgacctccgacgcagccgccgccgccgGAATGTGCGCTACAACATCGACTACGATGACTACCTCGACGAGgaggacgaggacgaggacgaggacgagCGGAGGCGCGAGAAGAAGAAGCTCAAGCTCGTCGTCAAGCTGAacaaccacgaagaggaagacgacgacgaggaagacgacgcgccgagtcgcgcagcgccgcgTGGAGTTCACGCGCCggaggagaaggtggaggaggaggaggaggaggaggaagaagaagaaggcgaagaggaggaagaagaagagaatgaggaggctgaggagcacgaagaagagCGTGAGGTAAAGGGCAGAAAAGTGGATTCCAAAGGGCTCCACtctgtttcagTGTTGGGAACTCCGTCGAAGCTTCCAGCTGGGATTCCGTTGCCCGACAAGAGAACCCTGGAGTTGATCCTTGACAAGCTTCAGAAGAAGGACACATACGGTGTGTATGCAGAGCCAGTTGATCCGGAAGAGCTTCCTGATTATCACGATGTGATTGAGCATCCCATGGACTTCGCTACAGTGAGGAAGAAGTTGGCAAATGGATCTTATCTTACCTTGGAACAATTTGAGAGTGATGTATTTTTGATTTGCTCAAATGCAATGCAATACAATGCGGCAGAGACTATATACCACAAACAGGCACGATCAATACAAGAACTGGCAAGGAAAAAGTTTGAAAAGTTAAGGATTGACTTTGAACGTTCTCAGAGTGAGCTGAAGTCTGAACAAAAAACTAGATCTAATTCCCTGGTTAAGAAGCTAGCAAAGAAGCCACTGGGACATGCATCACAGGAACCTGTTGGCTCTGATTTTTCCTCTGGTGCAACTCTTGCTACTATTGGTGATATACTGCCAACTTCCCATCCAATGCAAGGTGTTGTCTGTGAAAGGCCTGGCAACATTGATGGCCTTGTAGAGGGGAATGCTTTCTTAATTGAAGCAAATCAAGAGAAGGCAGAAGACTATATATCAGGGAGGGTTCTGCTCTCCAAGTTGGGAAGGAAACCATCTGTGCAAGATATTGAACGTCGTGCAACTTATAATACATCTAACCTACCAACTACTAGATCTGATTCCATATTTACAACATTTGAGAGTGAAATTAAGCAGCTAGTTCCTGTTGGACTACAAACTGAATATTCCTATGCCAGGAGTTTGGCTCGTTTTGCTGCAACCCTAGGACCTACTGCTTGGAAAATTGCTTCCCAGAGGATTCAGCAGGCAGTACCACCTGGCTGTAAATTTGGTCGTGGTTGGGTAGGAGAGTATGAGCCGCTTCCAACACCCGTATTAATGCTTGATAATCGTGCCCAGCAACAACCTAGTTTGGGGACAAATTTGCAGTCTACTACCGAATTGTTGAAGGTTGACAAAAAATGTAAGAATGTGGAATCCACTGTGGAACATCCTGTTAATGTACCAATGCATGAGGGAAAACAGCCTCCAGTTTGTTCTAGTAGTGGGTTTACATCAGATGGAAAATCATCTTTATTTGGTTCTGCTGGACCAAGACCCAGTGCTCATGTCAATAATCTCTTTTATCAGCAGCCCAATGTCCAAACCAGGAACCTCAATAAGTCTGAGAACAAGGGTTTGAAACAAGTGGAATTGAACTCTTTACCCTCAAGTGATCAAAATAATGCCAGTCTAGTTGCAAAGCTTACTAGTAATACTCCTGCAGCAGTGTCTAAGCCCAGAGAAATGGTACCAAGTAACAAGAATATTTTACCTTCTGTGCCTTTCAAGCAGCCAGATTCTAATGGAGTTGTTAGTGGAGAGTTGCCTAATGGAAAAGTAAGGAATACTAATTTAAATAGACGGATGACTGGTCCATCATCTGAAAGTACATCAAATCAAACAGGTAGAGCAGCTCCCTTTGTTGCCCATGGGCAGGAGCAGAATCTTAGTGACCCTGTTCAGTTGATGAGGATGTTAGCCGAAAAGACACAGAAGCAACAGACTTCTAGTTCATCCAATCATTCCCCGGCTGACACCCCACCAGTGACACCATCAGTTCCGTCAGGACGAAGAGAAGACTCGACCAATGCTTCAGCAGCAGCTGCCCGTGCATGGATGTCTGTAGGGGCAGCAGGTTTTAAACAAGGACCTGAAAATTCCAGTTCACCCAAAAATCAGATTTCTGCAGATTCATTGTACAACCCAGCACGAGATTTCCATCAGCATCAGCCTTTTTCTCGAATTAGGGGAGAGTTTCCTTCTGGTGGAATGCCTTTCCAGTCTGAGAAGAACAATTTTCCATTTCAGGCACTTGTACCCCAATCTGTTCACCCAGTTGGTGTTTCACAGTTTCCAAACCGACCTATGGTTTTCCCTCAAGTTGCAGCTTCTGACCTGTCAAGATTTCAAATACCTCCTTGGCGAGGTATCCGTCCTCATAGTCAACCAAGACAGAAACAGGAAACACTTCCTCCTGACTTGAATATTGGTTTTCAATCTCCTGGGTCACCTGCAAAGCAATCATCTGGTGTGCTGGTTGACTCCCAGCAACCGGACCTTGCTTTGCAACTATGA 2652 0.4118 MGQIVRRKKKGRPSKADLARRSGESPAAAQSDLRRSRRRRNVRYNIDYDDYLDEEDEDEDEDERRREKKKLKLVVKLNNHEEEDDDEEDDAPSRAAPRGVHAPEEKVEEEEEEEEEEEGEEEEEEENEEAEEHEEEREVKGRKVDSKGLHSVSVLGTPSKLPAGIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLANGSYLTLEQFESDVFLICSNAMQYNAAETIYHKQARSIQELARKKFEKLRIDFERSQSELKSEQKTRSNSLVKKLAKKPLGHASQEPVGSDFSSGATLATIGDILPTSHPMQGVVCERPGNIDGLVEGNAFLIEANQEKAEDYISGRVLLSKLGRKPSVQDIERRATYNTSNLPTTRSDSIFTTFESEIKQLVPVGLQTEYSYARSLARFAATLGPTAWKIASQRIQQAVPPGCKFGRGWVGEYEPLPTPVLMLDNRAQQQPSLGTNLQSTTELLKVDKKCKNVESTVEHPVNVPMHEGKQPPVCSSSGFTSDGKSSLFGSAGPRPSAHVNNLFYQQPNVQTRNLNKSENKGLKQVELNSLPSSDQNNASLVAKLTSNTPAAVSKPREMVPSNKNILPSVPFKQPDSNGVVSGELPNGKVRNTNLNRRMTGPSSESTSNQTGRAAPFVAHGQEQNLSDPVQLMRMLAEKTQKQQTSSSSNHSPADTPPVTPSVPSGRREDSTNASAAAARAWMSVGAAGFKQGPENSSSPKNQISADSLYNPARDFHQHQPFSRIRGEFPSGGMPFQSEKNNFPFQALVPQSVHPVGVSQFPNRPMVFPQVAASDLSRFQIPPWRGIRPHSQPRQKQETLPPDLNIGFQSPGSPAKQSSGVLVDSQQPDLALQL 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01942 883 MobiDBLite consensus disorder prediction 106 133 - -
Cca05g01942 883 PRINTS Bromodomain signature 198 214 IPR001487 GO:0005515
Cca05g01942 883 PRINTS Bromodomain signature 214 232 IPR001487 GO:0005515
Cca05g01942 883 PRINTS Bromodomain signature 232 251 IPR001487 GO:0005515
Cca05g01942 883 SMART bromo_6 162 270 IPR001487 GO:0005515
Cca05g01942 883 CDD Bromodomain 169 265 - -
Cca05g01942 883 Pfam Bromodomain 175 255 IPR001487 GO:0005515
Cca05g01942 883 MobiDBLite consensus disorder prediction 831 883 - -
Cca05g01942 883 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 883 - -
Cca05g01942 883 MobiDBLite consensus disorder prediction 1 15 - -
Cca05g01942 883 MobiDBLite consensus disorder prediction 1 166 - -
Cca05g01942 883 MobiDBLite consensus disorder prediction 62 80 - -
Cca05g01942 883 ProSiteProfiles Bromodomain profile. 181 251 IPR001487 GO:0005515
Cca05g01942 883 MobiDBLite consensus disorder prediction 687 705 - -
Cca05g01942 883 SUPERFAMILY Bromodomain 159 268 IPR036427 GO:0005515
Cca05g01942 883 MobiDBLite consensus disorder prediction 91 105 - -
Cca05g01942 883 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 883 - -
Cca05g01942 883 MobiDBLite consensus disorder prediction 636 661 - -
Cca05g01942 883 Gene3D - 100 290 IPR036427 GO:0005515
Cca05g01942 883 MobiDBLite consensus disorder prediction 687 728 - -
Cca05g01942 883 ProSitePatterns Bromodomain signature. 187 243 IPR018359 -
Cca05g01942 883 MobiDBLite consensus disorder prediction 842 883 - -
Cca05g01942 883 MobiDBLite consensus disorder prediction 598 661 - -
Cca05g01942 883 Coils Coil 104 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01942 Cca-Chr5 39217240 39223406 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01942 K22184 - gmx:100799986 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01942 05 39217240 39223406 Cca05g01942 05 39217240 39223406 ECH
Cca09g01101 09 32032598 32036127 Cca05g01942 05 39217240 39223406 PCT