Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00742 ATGGCTAAAAATCTTATAACTGTTGCATCGGTTTTGGTGTGTGTTTGGACTTGGATGCAAGGCACACATGGTGAGTACTTAATTGGGGTTGGGAGCTATGACATGACTGGTCCTGCTGCTGATGTGAACATGATGGGTTACGCAAACATGGAACAGAACACAGCTGGTATTCATTTCAGGCTAAGAGCAAGGACTTTCATTGTGGCTGAGAGCCTTCAAGGGCCTAGGTTTGTTTTTGTCAATCTTGATGCTGGAATGGCATCTCAGCTTCTTACTATCAAGGTGCTTGAGAGACTTCATTCAAGGTTTGGAAATTTGTATACCGAACAAAATGTAGCCATCAGTGGGACTCACACGCACGCTGGCCCTGGTGGTTACCTTCAATATGTGGTTTATTCTGTGACCTCTCTGGGTTTTGTGGAACAATCCTTTGATGCCATTGCTAATGCCATAGAACAAAGCATTATTCAAGCTCACAATAACCTTAAGCCTGGTTCCATTTTTATGAATATAGGAGATGTGAAGGACGCGGGTATAAACAGGAGTCCGAGTGCATATCTGCAAAACCCTGCAGAGGAGAGAGCAAGATATCCCACTAATGTTGACACACAAATGACCCTTTTGAGGTTTATGGATGGAGCAAGTGGTAAAAGTATTGGAGCATTTAGCTGGTTTGCAACACATGGTACCTCTATGAGCAGAGACAACAAGCTAATTAGCGGAGATAACAAGGGTGTTGCTGCAAGACTTTTTGAGGATTGGTTTGCTTCTCAAAATAAATCTTCATCCTCAAACACCAATTCCACAGAACCAGATATTAGACAACTAGTGAAAATAGCACGATCAATTAAGCCTACAGGAGGAAAGGATTGCAACCGAAAAGCAAGCCAAGCGTCCAAGGTGAGGAAGAATGATGGATCCTTATTTGTTGGAGCATTTTGCCAATCAAATGTTGGAGATGTGTCACCAAATGTTTTAGGAGCATTTTGCATCGATAATGGAAAACCTTGTGACTTCAACCATTCTTCATGCAATGGCAATGACCAACTTTGTGTTGGCAGGGGACCCGGATACCCAGATGAAATATTAAGCACAAAGATCATAGGTGAAAGGCAGTTCAAAACTGCTGTGGAACTGTTTGAGTCTGCTTCAGGGGAACTGGTAGGGAAAATTGACTATCGTCATGTGTACCTGAACTTCACAGACATTGAAGTTAAATTGGATAGCAACAAGGTGGTGAAAACTTGCCCTGCAGCACTTGGTCCTGGTTTTGCAGCAGGAACTACAGATGGACCAGGTGCTTTTGGGTTTCAACAAGGTGATACAGAGATTAATCCATTTTGGAAGGGTTTGAGGGATTTACTAAAAGAACCAAGTCAATATCAAGTGGATTGCCAGAACCCAAAGCAAGTTTTGTTGAGCACTGGGGAAATGTTTGATCCTTATCCTTGGGCGCCAGCAATTCTTCCAATTCAAATCATCAGATTGGGCAAGTTGATCATTCTTTCTGTACCAGGAGAGTTTACAACAATGGCTGGCAGAAGGCTAAGGGAGGCAGTGAAGGAGACATTAATATCAAGCAGCAATGGAGAATTCAATAATGAGACACATGTGGTTATAGCAGGACTGACAAATACTTACTCACAATATATTGCTACTTTTGAAGAATATAAGCAGCAACGGTATGAGGCTGCTTCAACATTGTATGGTCCTCACACATTATCAGCATACATCCAAGAATTTAAGAAACTAGCACGAGCAATGGTTGAAGGAATTAACATCCCTTTGAAAGGTCCTTCACCACCAGATCTCTCATCTGTACAAATAAAACTCTTATTGGGTCCCTTTGGAGACTCACCTCCAGAAGGAATCAAATTTGGTGACATAAAGGAAGACATATCCTTTCCAAAGGAAGGCTATTTTACGAAGGGAGACACATCATGTGCTACATTCTGGAGTGCCAATCCAAGATATGACCTTCTAACAGAAGGCACATTTGCAGCAGTGGAGAGGCTTCAAGGGGAAAGATGGATTGCTGTGTATGATGATGACGATTTAAGCTTGTTTCTCAAGTGGAAAGTAGATAATAGTTCCTATCAAGGCCTGGCTACCATAGAATGGGAAATACCAAATGAAGCAGTTTCTGGAGTATACAGACTAAAACACTTTGGAGCAACAAGGGTCACCATTTTGTCCCCTATTAGTTACTTTGTTGGTGCTTCAAGTGCATTTGCAGTGCAATAA 2244 0.4202 MAKNLITVASVLVCVWTWMQGTHGEYLIGVGSYDMTGPAADVNMMGYANMEQNTAGIHFRLRARTFIVAESLQGPRFVFVNLDAGMASQLLTIKVLERLHSRFGNLYTEQNVAISGTHTHAGPGGYLQYVVYSVTSLGFVEQSFDAIANAIEQSIIQAHNNLKPGSIFMNIGDVKDAGINRSPSAYLQNPAEERARYPTNVDTQMTLLRFMDGASGKSIGAFSWFATHGTSMSRDNKLISGDNKGVAARLFEDWFASQNKSSSSNTNSTEPDIRQLVKIARSIKPTGGKDCNRKASQASKVRKNDGSLFVGAFCQSNVGDVSPNVLGAFCIDNGKPCDFNHSSCNGNDQLCVGRGPGYPDEILSTKIIGERQFKTAVELFESASGELVGKIDYRHVYLNFTDIEVKLDSNKVVKTCPAALGPGFAAGTTDGPGAFGFQQGDTEINPFWKGLRDLLKEPSQYQVDCQNPKQVLLSTGEMFDPYPWAPAILPIQIIRLGKLIILSVPGEFTTMAGRRLREAVKETLISSSNGEFNNETHVVIAGLTNTYSQYIATFEEYKQQRYEAASTLYGPHTLSAYIQEFKKLARAMVEGINIPLKGPSPPDLSSVQIKLLLGPFGDSPPEGIKFGDIKEDISFPKEGYFTKGDTSCATFWSANPRYDLLTEGTFAAVERLQGERWIAVYDDDDLSLFLKWKVDNSSYQGLATIEWEIPNEAVSGVYRLKHFGATRVTILSPISYFVGASSAFAVQ 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00742 747 PANTHER CERAMIDASE 11 747 IPR006823 GO:0017040|GO:0046514
Cca09g00742 747 PANTHER NEUTRAL CERAMIDASE 11 747 - -
Cca09g00742 747 Pfam Neutral/alkaline non-lysosomal ceramidase, C-terminal 581 746 IPR031331 -
Cca09g00742 747 Gene3D - 615 747 IPR038445 -
Cca09g00742 747 Pfam Neutral/alkaline non-lysosomal ceramidase, N-terminal 26 579 IPR031329 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00742 Cca-Chr9 21687331 21696120 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00742 K12349 - gmx:100793262 1325.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02017 05 40020208 40021268 Cca09g00742 09 21687331 21696120 PCT