Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02093 ATGTTTCGTTGTTTCAAATTTGCAGATATCAATCACTCTTCTAATTTCGTCATGGCCAAATCCTCCTTCAAGCTTCAACATCCTTTGGAAAGAAGGCAGGCTGAAGCTGGTCGCATTAAAGAAAAATATCCTGATAGAATACCTGTGATTGTGGAGAAAGCGGAAAGAAGTGACATTCCTGACATTGATAAGAAAAAATACCTCGTCCCTGCTGATTTAACTGTTGGCCAGTTTGTTTATGTTGTCCGCAAAAGAATCAAGCTCAGTGCAGAGAAGGCTATATTTGTTTTCATCAATAACACTCTACCTCCAACTGCCGCATTGATGTCTGCTATTTATGAGGAAAATAAGGATCGAGATGGTTTTCTTTACATGACTTATAGCGGAGAGAACACCTTCGGATCCCACTAG 411 0.399 MFRCFKFADINHSSNFVMAKSSFKLQHPLERRQAEAGRIKEKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFINNTLPPTAALMSAIYEENKDRDGFLYMTYSGENTFGSH 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02093 136 CDD Ubl_ATG8 29 131 - -
Cca08g02093 136 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 14 134 IPR004241 -
Cca08g02093 136 Pfam Autophagy protein Atg8 ubiquitin like 31 134 IPR004241 -
Cca08g02093 136 Gene3D - 7 134 - -
Cca08g02093 136 PANTHER AUTOPHAGY-RELATED PROTEIN 14 134 - -
Cca08g02093 136 SUPERFAMILY Ubiquitin-like 20 134 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02093 Cca-Chr8 53903501 53905638 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02093 K08341 - gmx:100784677 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02093 08 53903501 53905638 Cca08g02093 08 53903501 53905638 ECH
Cca04g01012 04 10990350 10990628 Cca08g02093 08 53903501 53905638 ECH