Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01012 TTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCCGAGAAGGCCATCTTCATTTTTGTAAAGAACATCTTACCACCAACGGCGGCAATGATGTCTGCAATTTATGAGGAAAACAAGGATGAAGATGGATTCCTATATATGACTTACAGTGGAGAAAACACATTTGGGAATGTGTTCTGA 183 0.4098 FVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGNVF 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01012 60 Pfam Autophagy protein Atg8 ubiquitin like 1 57 IPR004241 -
Cca04g01012 60 Gene3D - 1 57 - -
Cca04g01012 60 SUPERFAMILY Ubiquitin-like 1 57 IPR029071 -
Cca04g01012 60 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 57 IPR004241 -
Cca04g01012 60 PANTHER AUTOPHAGY-RELATED PROTEIN 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01012 Cca-Chr4 10990350 10990628 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01012 K08341 - gmx:100500165 120.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01012 04 10990350 10990628 Cca04g01012 04 10990350 10990628 ECH
Cca04g01012 04 10990350 10990628 Cca08g02093 08 53903501 53905638 ECH