Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01799 ATGGTGGCTGCTTCCCCAAAATCCATAAGGAGCGAAAAGATTTTACCCATTGAACTTCCCGTGGTGGACCTATCTGCGGAAAGATCCATGGTGACAAAACTCATCGTGAAGGCTTGTGAGGACTATGGTTTCTTCAACGTGGTTAACCATGGTGTCCCTCGTGACACCATAGCCAAAATGGAAGAAGCAGGCTTCGATTTCTTTGCCAAACCAATGGCCCAAAAGAAACAGCTTCCTCCTTATGGCTGCAAGAACATAGGCTTCAATGGAGACATGGGCGAGGTCGAGTACCTTCTACTCGCTGCCACTCCTCACTCCATTGCTCACTTCAAAAACATCTCCAATGTGCCATCAAACTTCAGCTCTACTGTGAGTGCATACACAGAAGGTGTGAGGGAGTTGGCATGTGAGATTTTGGAGCTAATGGCAGAGGGTCTGGGGGTCCCTGACGCAAGGGCTTTCAGCAGGTTGATCAGGGATGTTGATAGTGACTCAGTCCTTAGGTTCAATCACTACCCTCCTATACTTAACAAAGACTGCAAGGACAAGGACAAGGACAAGTCCCCTTCCCACAGCCACACCAAGGTTGGCTTTGGGGACCATTCTGACCCTCAGATCCTTACCATCCTCAGATCCAACGATGTTCCTGGCCTCCAAATCTCTCTCCAAGATGGCGTGTGGAACCCAGTTGCTCCTGACCCTCAAGCTTTCTGTGTTAATGTGGGTGATCTTTTACAGGTGATGACAAATGGAAGATTTGTGAGCGTGAGACATAGGGCCGTGACCAACTCATACAAGTGTAGAATGTCGGTGGCATATTTCGGGGCTCCACCACTCGATGCATGCATTGTTGCACCCTCAGTTATGGTTACGCCTCAGAGGCCCTCACTCTTCAAAACCTTTACTTGGGCTGAATACAAGAAAGTTACGTACTCTATGAGGCTCGGGGAACGCCGCATCGACCTTTTCAGGAAGTAG 978 0.4908 MVAASPKSIRSEKILPIELPVVDLSAERSMVTKLIVKACEDYGFFNVVNHGVPRDTIAKMEEAGFDFFAKPMAQKKQLPPYGCKNIGFNGDMGEVEYLLLAATPHSIAHFKNISNVPSNFSSTVSAYTEGVRELACEILELMAEGLGVPDARAFSRLIRDVDSDSVLRFNHYPPILNKDCKDKDKDKSPSHSHTKVGFGDHSDPQILTILRSNDVPGLQISLQDGVWNPVAPDPQAFCVNVGDLLQVMTNGRFVSVRHRAVTNSYKCRMSVAYFGAPPLDACIVAPSVMVTPQRPSLFKTFTWAEYKKVTYSMRLGERRIDLFRK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01799 325 PRINTS Isopenicillin N synthase signature 35 52 - -
Cca08g01799 325 PRINTS Isopenicillin N synthase signature 201 222 - -
Cca08g01799 325 PRINTS Isopenicillin N synthase signature 237 263 - -
Cca08g01799 325 PANTHER PLANT GIBBERELLIN 2-OXIDASE 3 324 - -
Cca08g01799 325 SUPERFAMILY Clavaminate synthase-like 16 316 - -
Cca08g01799 325 Pfam 2OG-Fe(II) oxygenase superfamily 165 275 IPR044861 -
Cca08g01799 325 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 324 - -
Cca08g01799 325 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 162 277 IPR005123 -
Cca08g01799 325 MobiDBLite consensus disorder prediction 180 199 - -
Cca08g01799 325 Gene3D - 3 314 IPR027443 -
Cca08g01799 325 MobiDBLite consensus disorder prediction 180 198 - -
Cca08g01799 325 Pfam non-haem dioxygenase in morphine synthesis N-terminal 19 80 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01799 Cca-Chr8 50231042 50238588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01799 17 324 Glycosyltransferase AT5G59530 27.273 2.97e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01799 K04125 - gmx:100811043 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01799 08 50231042 50238588 Cca08g01799 08 50231042 50238588 ECH
Cca11g02662 11 54017158 54022239 Cca08g01799 08 50231042 50238588 PCT