Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01772 ATGTTCTTAATTAAGGTCTTGTGCACCTTCTCGCAGATTACAACTTCAGATAATTTACGACCAGCAAATTTTGTCTTCGGAGACTCTCTTGTCGACGTGGGGAACAACAATTACATTGCTTCTCTCTCAAGGGCTAATTACGTTCCCTTTGGAATTGATTTCGGAAGACCAACAGGAAGGTTCACAAATGGAAGAACCATTGTTGACATCATTGGTCAAGAAATGGGTATTGATTTTACCCCACCTTACCTAGCACCAACTACAGCTGGACCAGTGATTTTGAATGGTGTTAATTATGCTTCTGGTGCTGGTGGAATTCTCAACCTCACTGGAAAACTCTTTGGTGATAGAATCAACTTTGATGCACAGTTAGATAATTTTGCTAATACCAGGCAAGACATCATCTCCTACATTGGTCTTCCTGCGACTCTTAATCTATTCAGAAGGTCAATATTTTCAGTAACAATGGGTTCCAACGATTTCATTAATAACTATCTAGCACCAGCAGTCATAATTCTCGAGCAGGAATTGGCATCTCCAGAACTCTTTGTGACAACCTTAGTGTCAAGGTTCAGAGAACAACTCATTAGGCTATTCAATATGGGTGCTAGGAAAATTACTGTGACAAATGTGGGGCCTATTGGGTGTATACCAAGTCAGAGGGATACGAACCCAGCTGCGGGTGATGACTGTGTTACTTTCCCAAATCAACTAGCACAGTTGTTTAATTTCCGGTTGAAAGGCCTCATTCAAGAACTCAATTCAAATCTGAAGGGTTCAATGTTTGTTTATGCAGATGTCTACCACATTTTAGAAGATTTGCTCAACAATTACGCAGCATATGGTTTTGAAGACCCATCTTCGGGATGTTGTCGGGTTCTTCTTGGTGGGCGTTTTGGAGGTTTGATTCCCTGTGGTCCTACTTCGACAGTTTGTTCAGACAGATCCAAATATGTGTTTTGGGACCCTTGGCATCCTACTGATGCTGCAAATGTTATCATCGCTAAGCGCCTCTTAGATGGTGATCATAATGATATTTTTCCAGTGAATAGAACCAGAGACAGAGGCCCAATTCATTTTGATGGGATAGGCTTCTCAGATGATATACCAGCGTCTTTTGTCTTCGGAGATTCCTTGCTCGATGTGGGGAACAACAACTACATCGTTTCACTAGCCAAAGCAAACCATGACCCTTTTGGAATTGACTTTGGAATGCCCACTGGTCGTTTCAGCAATGGAAGAACAGTTATAGATATTATAAATCAGCAACTGGGTCTTGGCTTTTCACCTCCTTACTTGGCTCCCACTACTACTGGATCAGCTGTTCTCAAGGGTGTCAATTATGCTTCTGGTGCAGGTGGAATTCTCAATAATTCTGGTGAAATATTTGGTGGGCGAATCAACTTTGATGCACAGATTGACAACTTTGCAAATACAAGGGAAGAAATTATCTCCTTAATTGGTGTTCCTGCGGCTCACAATTTGTTTAACAAGTCCCTCTTTGTAGTTGAACTAGGCTCAAATGATTTCCTAGATAACTATTTGACACCTATATTCTCAATTCCAGAAAGGGTGTTGGTATCTCCAGAATCATTTGTGGCCACCTTAGTATCAAGACTCAAGCTACAGCTCACAAGGCTATTCAGTCTAGGGGCCAGAAAAATTGTTGTGGCAAATGTAGGACCTATTGGGTGCATACCATATTTGAGGGATTTTAACCCATATGCTGGAGATGAATGTGTCACTTTCCCTAATGAGCTAGCTCAGTTATTTAACACCAAATTGAAGAGCCTTGTTGCAGAGCTGAGGACAAAATTGGAAGGGTCATTATTTGTTTATGCAGATGTTTACCATACTATGGAAgatatgatactgaattataatgaatatgGTTTCGAGAATCCGAATAGTGCATGCTGTCACCTGGCTGGTAGATTTGGAGGCTTGATTCCATGCAATTATAATTCAAAAGTTTGTGAGGATCGGTCTAAGTATGTTTTCTGGGATACTTACCATCCTAGTGATGCTGCCAATGTTGTCATTGCTCAACGTCTCTTAAATGGTGATACTCGTGACATCTCACCTATGAACATTTGTCAACTTTCCAAAGCTTAA 2115 0.4057 MFLIKVLCTFSQITTSDNLRPANFVFGDSLVDVGNNNYIASLSRANYVPFGIDFGRPTGRFTNGRTIVDIIGQEMGIDFTPPYLAPTTAGPVILNGVNYASGAGGILNLTGKLFGDRINFDAQLDNFANTRQDIISYIGLPATLNLFRRSIFSVTMGSNDFINNYLAPAVIILEQELASPELFVTTLVSRFREQLIRLFNMGARKITVTNVGPIGCIPSQRDTNPAAGDDCVTFPNQLAQLFNFRLKGLIQELNSNLKGSMFVYADVYHILEDLLNNYAAYGFEDPSSGCCRVLLGGRFGGLIPCGPTSTVCSDRSKYVFWDPWHPTDAANVIIAKRLLDGDHNDIFPVNRTRDRGPIHFDGIGFSDDIPASFVFGDSLLDVGNNNYIVSLAKANHDPFGIDFGMPTGRFSNGRTVIDIINQQLGLGFSPPYLAPTTTGSAVLKGVNYASGAGGILNNSGEIFGGRINFDAQIDNFANTREEIISLIGVPAAHNLFNKSLFVVELGSNDFLDNYLTPIFSIPERVLVSPESFVATLVSRLKLQLTRLFSLGARKIVVANVGPIGCIPYLRDFNPYAGDECVTFPNELAQLFNTKLKSLVAELRTKLEGSLFVYADVYHTMEDMILNYNEYGFENPNSACCHLAGRFGGLIPCNYNSKVCEDRSKYVFWDTYHPSDAANVVIAQRLLNGDTRDISPMNICQLSKA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01772 704 Gene3D SGNH hydrolase 365 689 IPR036514 -
Cca08g01772 704 Gene3D SGNH hydrolase 15 341 IPR036514 -
Cca08g01772 704 SUPERFAMILY SGNH hydrolase 496 687 - -
Cca08g01772 704 Pfam GDSL-like Lipase/Acylhydrolase 373 684 IPR001087 GO:0016788
Cca08g01772 704 Pfam GDSL-like Lipase/Acylhydrolase 24 337 IPR001087 GO:0016788
Cca08g01772 704 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 365 702 - -
Cca08g01772 704 CDD SGNH_plant_lipase_like 370 689 IPR035669 -
Cca08g01772 704 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 12 350 - -
Cca08g01772 704 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 365 702 - -
Cca08g01772 704 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 12 350 - -
Cca08g01772 704 CDD SGNH_plant_lipase_like 21 342 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01772 Cca-Chr8 49875005 49879479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01772 369 698 Acyl Lipid Metabolism Gene Families AT4G10950 36.637 1.32e-69 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01772 - - ccaj:109788010 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01772 08 49875005 49879479 Cca08g01772 08 49875005 49879479 ECH
Cca11g02690 11 54311063 54312782 Cca08g01772 08 49875005 49879479 PCT