Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01660 ATGGAATACAGAACCTTAGAACTCAACATCATATCCGCCAAGGATCTCAAAAATGTCAACGTCTTCTCCAAGATGGACGTGTACGCCGTCGTTTCGCTCTCCGGCGACCCCCTCCACCCGCAGGGCGCCACCACCCACGTCCACAAGGACGGCGGCACCAACCCCACGTGGAACTACCCCGCCAAATTCTCCGTCAACGAGTCCCTGGCCAAGGAGAACCGTTTGTCCCTCGATATCAAGCTCGTCTCCGACCGCACCCTCGCCGGCGACACCGTCATCGGCACCGTCCACATCCCCCTCAGGGAGCTTCTCGACAACCCTCCCGAGGTAGGCCCCTTCCGCCAAGTCGGTTACTCGGTGAGGACATCCTCAGGAAAACCCAAGGGCACCCTCTATCTCTCCTACAAGTTTGGCGACCAGGTCGCAGCTCCGGCCGCCAAATCAGCACCGAAGAAGGCAGGAGAAGAGCCTGTCATGGCTTATCCTCCTTCGGCCGCAACTGCGGCCGGATCTAGTTCTGTGCCATATGCGGCACCGTATGTTCCGCCGTCGCAGCAACAATATGCTGCGACGGCGGGATATGGGTATCCACCACAACCAGCTGTTGGTGGATACCAACAAACGGGTTATGGATATCCACCACAACCCGGTTATGGGTATCCACCACAACAAGCTGGTTATGGATACCCACCCCAACAAGGTGGATATGGGTATGCACAGGCGCCACAACGAAAGAAGAACAAATTTGGAATGGGATTGGGAGCTGGATTGCTTGGTGGTGCCTTGGGTGGCATGTTGATTGGAGATATGGTATCTGATGCTGCTGCTTATGATGCGGGCTATGATGCTGGCTTTGATGATGCTGGCTTTGATGATGCTGGAtttgatttttaa 894 0.5537 MEYRTLELNIISAKDLKNVNVFSKMDVYAVVSLSGDPLHPQGATTHVHKDGGTNPTWNYPAKFSVNESLAKENRLSLDIKLVSDRTLAGDTVIGTVHIPLRELLDNPPEVGPFRQVGYSVRTSSGKPKGTLYLSYKFGDQVAAPAAKSAPKKAGEEPVMAYPPSAATAAGSSSVPYAAPYVPPSQQQYAATAGYGYPPQPAVGGYQQTGYGYPPQPGYGYPPQQAGYGYPPQQGGYGYAQAPQRKKNKFGMGLGAGLLGGALGGMLIGDMVSDAAAYDAGYDAGFDDAGFDDAGFDF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01660 297 Gene3D C2 domain 2 162 IPR035892 -
Cca08g01660 297 ProSiteProfiles C2 domain profile. 1 113 IPR000008 -
Cca08g01660 297 PANTHER INGRESSION PROTEIN FIC1 1 236 - -
Cca08g01660 297 PANTHER PROTEIN SRC2 1 236 - -
Cca08g01660 297 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 139 IPR035892 -
Cca08g01660 297 Pfam C2 domain 5 110 IPR000008 -
Cca08g01660 297 SMART C2_3c 5 112 IPR000008 -
Cca08g01660 297 CDD C2_SRC2_like 5 133 IPR044750 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01660 Cca-Chr8 48298079 48300126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01660 2 128 Lipid Metabolism Gene Families AT4G00700 29.457 7.19e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01660 - - gmx:547451 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01660 08 48298079 48300126 Cca08g01660 08 48298079 48300126 ECH
Cca11g02785 11 55189861 55190706 Cca08g01660 08 48298079 48300126 PCT