Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01477 ATGATCGGAGGCAAAGACGTTTACCACGTAGTGGAAGCTCTCGTGCCCCTCTACGTGTCCATGATCCTAGCCTACGGCTCCGTGCGTTGGTGGAAGATCTTCACCCCCGAACAGTGCCTAGGTGTGAGTCGTTTCGTGTCGATGTTCGCAGTCCCTTTCCTTGCTTTCTTTTACATAATGCAAAACGACCCTTATACCATGAACCTCAAGTTCTTAGTCGCGGACTCGCTCCAAAAAGTGGTGACCATCGTGGTGCTGATCCTGTGGAACAGTTTCACCAAATGGGGTAGCTTCAACTGGAGCATCACGCTCTTCTCCCTCGCTTCTCTCCCCAACACACTCATCATGGGAGTCCCGCTTCTGAAAGCCATGTACGGGGACTTCACCAAGAGTCTCATGATCCAAATCGTGTTCTTACAAGGTGTCATTTGGAACACTCTTTTGTTGTTCATGTTCGAGTATAGAGCCGCCAAGCTTCTCATTTCGCAACAGTTTCCCGACACCGCAGGGGCCATTGCCTCGTTCAGGGTGGATTCCAATATTAGCTCTCTCAGCGGAAGGGAACCCTTGCATGCTGACGCTGAAATCGGAGAAAACGGGGTACTCCATGTGAGGGTTAGGAGCATTTCACGTTCTCTGTCTGTGGCGTCTTCGTTGATGCGCAATTCGCTTCGAGAACCAACGGAAGGAGCCTCGAATTTTGATGTCGCGAGTGCGCAACATGATGATGAGGAGAATAGGACTTGGAGGAGCAAGAGTTGTAGCGATGGAAATTTTAACAACGGTTTGGCTTCCTCGTACCCGAAGCTTCCTGGGTCTAAAAGTAGTGGTCAAAGGAACATAGATATTGTGAATATCTATGGCTGTGCAACTAATAATAACAGGTTGCATTGGAATTCAAATGAATTGCCAATTTCCGATGCTAGTTCGAGACATGGTGGAGTGAATGGATCTTCCAAGGTCGTTGATTTTCCACATGAAACTGTTACCGCTGAAGTAGTGCATGAGGTTGAAAGTGAGGAAAATCCTGTGATGGGGAGCCAGAAGGAGGGGAGTACTGAAGAAGGTGATGCAAATAAAAGGCAAATAATGCCAAGTGTGGGTGTCATGATAAGGCTTATTCTCACCATGGTTTGGAGGAATCTCGTAAGAAATCCCAATACCTACGCCAGTGTTTTAGGCCTTGTTTGGTCTCTCATATCGTTTAGGTGGAAATTAAAATTGCCATATATTATACACCGTTCCATCACTGTCGTGTCTGATACCGCTCTCGGAATGTCCATGTTCAGTCTAGGTATATTCATGGGATTACAACCCAAGTTCCTTACTTGTGGAATACCTAAGGCTGTTATGGCATTGGCAATTAAGTTCTTGGTTGCTCCATTAGTGGTTGCTGCAACCTCAAAAGCCTTGGGTATCCGTGGAGAACTTTTTGCTGTTGAAATTATTCAGGCTGCTCTTCCTCAGGGTATTGTTCCCTTTGTATTCGCCAAAGAATATAATCTCCACCCAGACATACTCAGTTCAGCGGTTATCTTTGGCATGGTGATTGCGTTGCCCGTAACAATAATCTACTATGTGATTCTTACGGTGTAA 1596 0.4637 MIGGKDVYHVVEALVPLYVSMILAYGSVRWWKIFTPEQCLGVSRFVSMFAVPFLAFFYIMQNDPYTMNLKFLVADSLQKVVTIVVLILWNSFTKWGSFNWSITLFSLASLPNTLIMGVPLLKAMYGDFTKSLMIQIVFLQGVIWNTLLLFMFEYRAAKLLISQQFPDTAGAIASFRVDSNISSLSGREPLHADAEIGENGVLHVRVRSISRSLSVASSLMRNSLREPTEGASNFDVASAQHDDEENRTWRSKSCSDGNFNNGLASSYPKLPGSKSSGQRNIDIVNIYGCATNNNRLHWNSNELPISDASSRHGGVNGSSKVVDFPHETVTAEVVHEVESEENPVMGSQKEGSTEEGDANKRQIMPSVGVMIRLILTMVWRNLVRNPNTYASVLGLVWSLISFRWKLKLPYIIHRSITVVSDTALGMSMFSLGIFMGLQPKFLTCGIPKAVMALAIKFLVAPLVVAATSKALGIRGELFAVEIIQAALPQGIVPFVFAKEYNLHPDILSSAVIFGMVIALPVTIIYYVILTV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01477 531 Coils Coil 531 531 - -
Cca08g01477 531 MobiDBLite consensus disorder prediction 338 358 - -
Cca08g01477 531 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 326 531 IPR033526 GO:0010315|GO:0010329
Cca08g01477 531 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 272 IPR033526 GO:0010315|GO:0010329
Cca08g01477 531 MobiDBLite consensus disorder prediction 230 255 - -
Cca08g01477 531 Pfam Membrane transport protein 9 526 IPR004776 GO:0016021|GO:0055085
Cca08g01477 531 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 272 - -
Cca08g01477 531 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 326 531 - -
Cca08g01477 531 TIGRFAM 2a69: auxin efflux carrier 1 530 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01477 Cca-Chr8 43702721 43707146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01477 1 529 Organic Solute Cotransporters AT1G70940 42.879 6.59e-167 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01477 K13947 - gmx:100788935 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01477 08 43702721 43707146 Cca08g01477 08 43702721 43707146 ECH
Cca11g02451 11 51564844 51568435 Cca08g01477 08 43702721 43707146 PCT