Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01465 ATGGCGGTGAAGAAGCCACGGATTGTGATAATTGGAGCAGGAATGGCAGGCCTCACTGCTGCCAACAAGCTCTACACTGCCACTGCCTCAAAGGACTTGTTTGAGCTGTGTGTTGTGGAGGGTGGAAGCAGGATTGGTGGCAGAATCAACACTTCAGAGTTTGGTGGTGACCGTATTGAGATGGGTGCTACTTGGATCCATGGAATTGTAGGTAGCCCTATTCACAAAATTGCTCAAGAAATCCACTCACTCCACTCTCACCAACCTTGGGAGTGCATGGATGGGAACACTGATGATGCCATCACCATTGCTGAAGGTGGCTTCCACCTCAACCCTTCCATTGTTGACCCCATCACAAAGCTCTTTAACAACCTCATGGACTACTGTCAAGGGAAGCTCACTCGAGCCACTGCAAAGGGTGAACTCGAAAGCTACCACAACCTGGCTTCTCTGGCTGCTAAGGTTGCTTCCAACAACAACAACAACCTTAGTGTTGGTTCTTTCCTCAGACAAGGCCTTGAGGCTTACCAGGTGTCAAAGGAGCAAGAGGAGGTCAAAGGGTGTGGGAACTGGAGCAGGAAGTTGCTTGAGGAGGGTATCTTTGCAATGCATGAGAACAACCAGAGGACTTATACCTCTGCTGATGACCTTTTCACCCTGGATTATGGTGCTGAGAGTGAGTATAGAATGTTCCCTGGTGAAGAAATCACAATTGCTAAAGGGTACTTGAGTATAATTGAGTACTTAGCTTCTGTGTTGCCACCTGGTTTGGTTCAGTTGGGTAGGAAAGTCACAAGGATTGAGTGGCAGGCTGATGAGAGGAAGGGTGTGGAGAATGGCTATGGGGGTTGTTGTTCTAGGCCTGTGAAGCTGCATTTTTGTGATGGCTCAGTTATGTCTGCTGATCATGTCATTGTCACAGTTTCACTGGGAGTGTTAAAAGCTGCTATTGGTGATGATGATTCAGGTATGTTCTGTCCTCCTCTTCCCCCTTCCAAGACTGAGGCTATTTCAAGGCTTGGTTTTGGGGTTGTTAACAAGTTGTTTATGCAATTGAGTCCAACACATGGAGTAGACAAAAATGAACATGAACAATCCAACAAAGGGTTTCCTTTCCTGCAAATGGTTTTTCATTCTCCTCAATCTGAAATGAAGCACAAGAAAATACCCTGGTGGATGAGGAAGACAGCCACCCTTTTCCCCATCTACAACAATTCTAGTGTCCTCTTGTCATGGTTTGTGGGGGAAGAAGCACTAGCACTTGAGTCACTCAAAGATGAAGAGATCATCAATGGGGTTTCATCCACAGTCTCGTGCTTTCTACAGCATTCTCAGTGGCAAAAGGGTTCCAGTTCACATAAATTGTGCAATGGTAATGCGAATTCTGAGGAGGGATCTCACCAAAATGAATTGAAGTTCAGTAAAGTCTTGAAGAGCAAATGGGGGACTGATCCCTTGTTTTTAGGGTCATACAGTTATGTTGCAGTAGGATCAAGTGGTGATGATTTAGATACAATGGCAGAGCCATTGCCAAAAGATAGCAGTTGTCAGCCTTCTGCTTCATCTCCACTTCAAATTTTGTTTGCAGGGGAAGCAACTCACAGAACTCATTATTCCACGACTCATGGAGCTTACTTCAGTGGCCTTAGGGAAGCCAATAGGCTTCTTCAACATTATCATTGTGTTGGGATTTATAACAACTAG 1704 0.4554 MAVKKPRIVIIGAGMAGLTAANKLYTATASKDLFELCVVEGGSRIGGRINTSEFGGDRIEMGATWIHGIVGSPIHKIAQEIHSLHSHQPWECMDGNTDDAITIAEGGFHLNPSIVDPITKLFNNLMDYCQGKLTRATAKGELESYHNLASLAAKVASNNNNNLSVGSFLRQGLEAYQVSKEQEEVKGCGNWSRKLLEEGIFAMHENNQRTYTSADDLFTLDYGAESEYRMFPGEEITIAKGYLSIIEYLASVLPPGLVQLGRKVTRIEWQADERKGVENGYGGCCSRPVKLHFCDGSVMSADHVIVTVSLGVLKAAIGDDDSGMFCPPLPPSKTEAISRLGFGVVNKLFMQLSPTHGVDKNEHEQSNKGFPFLQMVFHSPQSEMKHKKIPWWMRKTATLFPIYNNSSVLLSWFVGEEALALESLKDEEIINGVSSTVSCFLQHSQWQKGSSSHKLCNGNANSEEGSHQNELKFSKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDTMAEPLPKDSSCQPSASSPLQILFAGEATHRTHYSTTHGAYFSGLREANRLLQHYHCVGIYNN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01465 567 Gene3D - 452 563 IPR036188 -
Cca08g01465 567 Pfam Flavin containing amine oxidoreductase 15 556 IPR002937 GO:0016491
Cca08g01465 567 Gene3D - 92 444 - -
Cca08g01465 567 SUPERFAMILY FAD/NAD(P)-binding domain 1 559 IPR036188 -
Cca08g01465 567 PANTHER FLAVIN MONOAMINE OXIDASE 1 563 - -
Cca08g01465 567 Gene3D - 8 339 IPR036188 -
Cca08g01465 567 PANTHER POLYAMINE OXIDASE 5-RELATED 1 563 - -
Cca08g01465 567 SUPERFAMILY FAD-linked reductases, C-terminal domain 341 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01465 Cca-Chr8 43447943 43450980 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01465 K12259 - gmx:100783032 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01465 08 43447943 43450980 Cca08g01465 08 43447943 43450980 ECH
Cca11g02472 11 51860246 51861844 Cca08g01465 08 43447943 43450980 PCT