Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01428 ATGGCGATCTCCGATGTGTCTGAAAGCGTAGGCACCGCCTCCGTCCAAAGCGACTCGGATCTCAGACTGCGGCGCAAGTCCAGCGCCACCTCCGCCGGCGGCCTCTTCGACGCCGAAGACGCCGTCAGATATTCAGGCTCCGACGAGTCCTTGAACGGAAAGAGCAACGACGAGAATCAAGATCCCAAGATGAATCATGCAGACTCCGATAATGCGACCGCCAATGACCGAGAACTAGTCGCCGAGGTCAAATACGCTTACCGTCCCTCCGTTCCCGCTCACCGCAGAATCAAGGAGAGTCCGCTCAGCTCCGACAACATTTTCAGACAGAGTCACGCAGGACTGTTCAATCTCTGTATAGTAGTGCTTGTTGCGGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGTATGGTTGGTTGATTAAATATGGCTTTTGGTTTAGTTCAAAATCGTTGAGAGATTGGCCCCTCTTCATGTGCTGTCTTAGTCTCAACATATTTCCGCTTGCTGCCTTTCTAGTGGAAAGGTTGGCACAACAAAAGTGTATTTCTGAACCAGTTGTTGTTCTACTTCATGTAATCATCACGATTGTTGAATTCTCCTATCCAGTTTTAGTGATACTCAGGTGCGATTCTGCTTTTTTATCCGGTGTCACGTTGATGCTATTTACTTGCATTGTGTGGTTAAAATTGGTGTCATATGCACATACAAACTATGATATGAGAGCACTTACTGTTTCAAATGAAAAGGGAGAAACATTACTTGATACTTCGATTATGGAGTATCCGTACATTGTGACCTTCAAGAGTTTGGCATACTTCATGGTTGCTCCTACATTATGCTATCAGACAAGCTATCCTCGCACACCTTCTGTTCGAAAAGGTTGGGTGTTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTCATGGGGTTTATAATAGAACAATATATGAATCCTATTGTACAAAATTCTCAACATCCTTTGAAGGGAAACCTTCTATATGCCATTGAGAGAGTTTTGAAGCTTTCTGTTCCAAATGTATACGTGTGGCTCTGCATGTTCTACTGCTTTTTCCACCTTTGGTTAAATATACTTGCAGAGCTTGTTCGATTTGGTGATCGTGAGTTCTATAAAGATTGGTGGAATGCCAAGACTGTTGAAGAGTATTGGAGAATGTGGAATATGCCTGTGCACAAATGGATGGTTCGCCACATATATTTTCCATGCATAAGGAATGGTATACCCAAGGGTGCTTCTGCATTAATTGCCTTCCTGGTCTCTGCGGTGTTTCATGAGTTATGCATTGCCGTTCCTTGCCATGTGTTCAAGTTGTGGGCTTTTATAGGAATTATGTTTCAGGTTCCTTTGGTCTTGATCACTAATTACCTGCAAAATAAATACAGAAACTCAATGGTTGGAAATATGATTTTTTGGTTCATATTTTGTATTCTTGGGCAACCTATGTGCGTATTATTATACTACCATGACTTGATGAATAGAAAAGGAGAAGTTGACTAA 1527 0.425 MAISDVSESVGTASVQSDSDLRLRRKSSATSAGGLFDAEDAVRYSGSDESLNGKSNDENQDPKMNHADSDNATANDRELVAEVKYAYRPSVPAHRRIKESPLSSDNIFRQSHAGLFNLCIVVLVAVNSRLIIENLMKYGWLIKYGFWFSSKSLRDWPLFMCCLSLNIFPLAAFLVERLAQQKCISEPVVVLLHVIITIVEFSYPVLVILRCDSAFLSGVTLMLFTCIVWLKLVSYAHTNYDMRALTVSNEKGETLLDTSIMEYPYIVTFKSLAYFMVAPTLCYQTSYPRTPSVRKGWVFRQLVKLIIFTGVMGFIIEQYMNPIVQNSQHPLKGNLLYAIERVLKLSVPNVYVWLCMFYCFFHLWLNILAELVRFGDREFYKDWWNAKTVEEYWRMWNMPVHKWMVRHIYFPCIRNGIPKGASALIAFLVSAVFHELCIAVPCHVFKLWAFIGIMFQVPLVLITNYLQNKYRNSMVGNMIFWFIFCILGQPMCVLLYYHDLMNRKGEVD 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01428 508 MobiDBLite consensus disorder prediction 1 72 - -
Cca08g01428 508 Pfam MBOAT, membrane-bound O-acyltransferase family 173 495 IPR004299 -
Cca08g01428 508 PIRSF Oat_dag 4 508 IPR027251 GO:0004144|GO:0019432
Cca08g01428 508 PANTHER STEROL O-ACYLTRANSFERASE 19 508 IPR014371 GO:0008374
Cca08g01428 508 MobiDBLite consensus disorder prediction 54 72 - -
Cca08g01428 508 MobiDBLite consensus disorder prediction 1 18 - -
Cca08g01428 508 PANTHER DIACYLGLYCEROL O-ACYLTRANSFERASE 1C 19 508 - -
Cca08g01428 508 PIRSF Oat_ACAT_DAG_ARE 3 508 IPR014371 GO:0008374
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01428 Cca-Chr8 42531067 42542538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01428 26 508 Lipid Metabolism Gene Families AT2G19450 69.979 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01428 K11155 - gmx:547982 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01428 08 42531067 42542538 Cca08g01428 08 42531067 42542538 ECH
Cca11g02492 11 52089628 52096023 Cca08g01428 08 42531067 42542538 PCT