Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01403 ATGGCTTCCACTTCTGCAGTTTCAATGGCTATGCCACTAACATATGCCAGCCAGAAGAGGGTGGTGCCTAGCTCTGATGCATTCTTCAAGCCACTGCCTCTACGGTCTTCAAAGGCAGTGGCAGCATCGAAACCCAATGGAAGGTTTCTAGTGAGGGCCTCCATGAAGGAGAAAGTTGTGACAGGGCTCACAGCAGCTGCATTGACAGCTTCAATGATGGTTCCTGATGTAGCTGAAGCTGCTGTTACACCTTCTCTCAAGAACTTCTTGCTCAGCATCGCGGCTGGTGGAgttgttgttgtagtcattgttggtgctgtgattggtgttTCCAATTTCGACCCTGTCAAGCGAAGCTGA 360 0.4528 MASTSAVSMAMPLTYASQKRVVPSSDAFFKPLPLRSSKAVAASKPNGRFLVRASMKEKVVTGLTAAALTASMMVPDVAEAAVTPSLKNFLLSIAAGGVVVVVIVGAVIGVSNFDPVKRS 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01403 119 Gene3D Single helix bin 81 119 - -
Cca08g01403 119 PANTHER OS07G0673550 PROTEIN 1 119 - -
Cca08g01403 119 Pfam Photosystem II reaction centre X protein (PsbX) 82 119 IPR009518 GO:0009523|GO:0015979|GO:0016020
Cca08g01403 119 PANTHER EXPRESSED PROTEIN 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01403 Cca-Chr8 41950982 41951656 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01403 - - gmx:100306291 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01403 08 41950982 41951656 Cca08g01403 08 41950982 41951656 ECH
Cca11g02520 11 52332612 52333091 Cca08g01403 08 41950982 41951656 PCT