Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01395 ATGGAGGGTGACACATTCTCTGGCCTAGGCAATGGTGATGCCAAGATCATGCAGACATTTCAGAAGAGCTTTGTGCAAGTTCAGAACATTTTTGATCAGAATAGGTTACTCATCAATGAGATAAACCAGAACCATGAGTCTAAGGTCCCCGATAACCTCACCAGGAATGTGGGGCTCATTAGGGAGCTCAACAACAATATCAGAAGAGTTTATGACCTATATGCTGATCTTTCAAGTTCCTTTACCAAATCCATGGAAGTTACTTCAGAAGGGGATTCAAGTGGTGCTGTGAAGTCAGATGGGAAAGCAGGCCACAAGAGACACAGGCCTGTGTAG 336 0.4435 MEGDTFSGLGNGDAKIMQTFQKSFVQVQNIFDQNRLLINEINQNHESKVPDNLTRNVGLIRELNNNIRRVYDLYADLSSSFTKSMEVTSEGDSSGAVKSDGKAGHKRHRPV 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01395 111 Pfam Early Flowering 4 domain 12 92 IPR009741 -
Cca08g01395 111 MobiDBLite consensus disorder prediction 85 111 - -
Cca08g01395 111 PANTHER PROTEIN ELF4-LIKE 4 1 110 IPR040462 GO:0042753
Cca08g01395 111 PANTHER PROTEIN ELF4-LIKE 3 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01395 Cca-Chr8 41735451 41735786 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01395 - - ccaj:109808760 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01395 08 41735451 41735786 Cca08g01395 08 41735451 41735786 ECH
Cca11g02522 11 52340682 52341585 Cca08g01395 08 41735451 41735786 PCT