Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01314 ATGGCTCATTTGTTAGGCTATGATCCTTGTTCCCGTTTCAGTAGGGCCTTTCCCCATTACCCTTCTGGCTCTTCCTACGAGGGTAATAGACACGTTGGATTCACTCTTAAAGCATGCTTTGATGCCAATGGTGGTGACAATGCTAATAGGCTCTTTGTGAAGGAAAAGAAAAAGCCCTTTGGTTTTACATGTGTTCCTCTCCCCCCCTTGTTAGGTGATTTAGAGAAGGGTAATTCTGTCAGAGATGATGGTCGTGATGCCTCTCGTATTGATGTTGAAGATAAATCTTTGGGGGGAAGTCCCACCAAACCCTTTTGTTTCCCTGATCAACAATTGCCCCAGAAACttgttgttgctgttgatgttgatgaagTATTAGGAAACTTTGTGTCAGCTCTGAACGAGTTCATAGCGGATAGATACTCATCACATCATTCAGTTTCCGAGTATCATGTGTATGAGTTCTTCAAGATATGGAACTGTTCACGTGATGAAGCTAATACCCGTGTTCACGAGTTTTTTGAGACACCATACTTCAAGTTAGGGATACAGCCTATCCCGGGTGCTCAGATGGCCCTGCAGAACTTATCAAGATTTTGTAACCTATCAGTTGTAACATCCCGACAAAATGTTATCAAGGATCACACACTTGAGTGGATAGAGAAGCATTTTTCAGGATTGTTTCAGGAAATTCACTTTGGAAACCACTTTGCTCTGGATGGGGTGTCAAGACCAAAGTCAGAGATTTGTAGGTCTTTGAATGCTAAGGTTCTTATTGATGATAACCCAAGATATGCCACAGAGTGCGCTGAAGCTGGAATTAGAGTCCTACTTTTTGATTATGAAAACTCGTACCCATGGTCCAAGACTGAGTCTGATTATCAACATCCCCTGGTGACCAGAGTAATAAACTGGGAAGAAGTTGAACAACAATTGATGTCACTGATAGCTTCTAGTTAA 960 0.4104 MAHLLGYDPCSRFSRAFPHYPSGSSYEGNRHVGFTLKACFDANGGDNANRLFVKEKKKPFGFTCVPLPPLLGDLEKGNSVRDDGRDASRIDVEDKSLGGSPTKPFCFPDQQLPQKLVVAVDVDEVLGNFVSALNEFIADRYSSHHSVSEYHVYEFFKIWNCSRDEANTRVHEFFETPYFKLGIQPIPGAQMALQNLSRFCNLSVVTSRQNVIKDHTLEWIEKHFSGLFQEIHFGNHFALDGVSRPKSEICRSLNAKVLIDDNPRYATECAEAGIRVLLFDYENSYPWSKTESDYQHPLVTRVINWEEVEQQLMSLIASS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01314 319 Pfam 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 116 312 IPR010708 GO:0008253|GO:0009264
Cca08g01314 319 Gene3D - 166 315 IPR023214 -
Cca08g01314 319 PANTHER NUCLEOTIDASE YQFW-RELATED 26 317 - -
Cca08g01314 319 MobiDBLite consensus disorder prediction 76 93 - -
Cca08g01314 319 MobiDBLite consensus disorder prediction 75 94 - -
Cca08g01314 319 SUPERFAMILY HAD-like 117 285 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01314 Cca-Chr8 39520221 39525773 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01314 - - aprc:113852922 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01314 08 39520221 39525773 Cca08g01314 08 39520221 39525773 ECH
Cca11g02593 11 53198779 53203323 Cca08g01314 08 39520221 39525773 PCT