Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01194 ATGGTTCTAGGCATGAAAGGAAAGAACAGGAGAAGCCTCACAGTTCAACTTGATTTCCTCATTCACATTCAGGAGATTAAGCCCTGGCCCCCATCACAATCTCTAAGATCCCTTCGTTCTGTGTTGATAGAATGGAAGAATGGAGAATGTGCATCAGGTTCCACCACTCTTGTTGCCCCTTCACTTGGTTCAGTCATAGGTGAAGGAAGAATCGAATTCAATGAGTCATTTAGGCTTCATGTGACTTTGTTGAGGGATATGTCTGTGAGAAGTGTTGATTCTGATGTGTTCCAAAAGAATTTGTTGGAGTTCAACTTGTATGAGCCAAGAAGAGATAAAACTGTAAAGGGTCAGTTGTTGGGGTCTGCCATCATAGACTTGGCTGAATATGGGACACTTCAAGAGACTTTGAGCACTAATGTGCCTATGAACTGCAAGAGGAGCTACAGGAATACAGATCAGTCCTTTTTGTTCATTAAAATTCAGCCTGTTGAAAGGAATCGCGGTGCTAGTACCTCGTTGAAGGACAATCATGGTGGTGACTCAGTGTCAACACTCATGAATGAAGAATATGCTGAGGAAGCTGAGATTGCCTCTTTTACTGATGATGATGGCTCCTCACATTCTTCTGTGGCTGCTGTTTCTACTTCTATTGAGTCTAGTGGGTTTACCTCGTCCAAATTGGAAAAGAATGAACCATTTGACAACACTAGTGTGAATGGCAAGGAACATCCATTGGCTTCAGAAAAAAGGCTTGGAAACATGAATATGGCGCAACAAGATACATACAACAAGCTTGACAGAAGTTCTTACAATTCTAAAACAGATGTATCTTCTGCTATCAGGAGTCTGGTAAATGGCCATGCTTCTAACTCTCCTAATCGTAATTCTTCGTCAATCCAAAAGCTTGTTTCTTCACCTAGTGCTGATTCTTCTTCCCCATCTTCAGTTTGTGACAATTTAGACATAAATTATAGGAACGGGACAAGAAGAAGTGGTCATGAAAATTTGGATCAGAGTTTTAATGAAAAACTAGCTAACTATAGAAACATTGTTGCAGAAGTCCAGAAAAACAGTAATGAAAGCACTTTTGGCATCTATTCAAAGCACACATCATCTCAAGATAGTGGTCAGTTCAATGGTAAAAATCCAGCCTCTGAAAACTGTGATACTTCTGAATGTGATGAGAAATTAATTGGGAGACGTAAAACTGACAAATATTTTATGAAGGAGAGAGGAGGTGATAAAGTTTTCCATGGTTCTGTTGAGGACATAAATGTTAACGAAAAGTCTAATTTGGATTGGCAAAACGGCATGGAAGATGAACAATTGGTGGCACAAGGTGCCAAGGATCAAGCCTTATTGGGTAGCAATACATATTCTTTTGGGGAGCCAAATGCTGGTATGCAGGAAAATATTCTCAAAAGTGAAAGACTAAAGAACATGAAGTCAGTGAGGTTGCCAGCAGACTCAGCTAGGAATGCCGAATCACTTGGTAGCAATCATCATGCTGAATTGAATGAAAATGGCATTCATGAAGAAGCACAAAACAGTGGAGGGAACAGAATCAGTGACAGAAAAGATGCTAAGATTCATGCAAAGGAAGCAAGAAATGGTACTTTTGATGGAAAAATTGAGCATTTGGAAAAGAAGATAAAGATGCTTGAAGGAGAGTTAAGAGAAGCTGCTGCTATTGAGGCTGCTTTATATTCAGTAGTTGCTGAGCATGGAAGCTCCATGAGTAAAGTTCATGCCCCAGCTCGGCGCCTTTCCAGGCTCTATCTTCATGTTTGTAAAGAAAATCTTCAAGGAAGAAGAGCTGGGGCAGCTAAGAGTTCTGTTTCAGGATTGGTACTCGTTACAAAGGCATGTGGAAATGATGTCCCAAGGTTGACATTTTGGCTGTCTAATACTATAGTGCTGAGAACGATTATTAGCCGAACCATCAAAGATTTGGTTCCATCAAATCCTGATGGATCTGGTAGGAGAAGGAAAATTGAGGGAGAGGAGGTGCATGGCAAGATAACTACCTCACTAAAGTTGAAGGGTTTATACCCTAGAAAAAATGAAAATACAGCATTAGGATATGGAGGTTTTGGTAACTGGGATGATCCTCAGGTATTTATATCAGCACTGGAAAAGGTTGAAGCATGGATATTCTCTCGCATTATAGAATCTATCTGGTGGCAGACTTTGACTCCCCACATGCAGCATACAAAGTTGACCAACAAGGAAGTGGGTTCTGCCTCAAGAAAAAGCTATAAAAGGACATCTAGCTCATGTGATCAAGAGCAGGGTAACTTGTCTCTATATATTTGGAAGAAAGCTTTCAGGGAAGCATGTGAAAGGCTCTGTCCTATTCGAGCAGGAGGGCATGAGTGTGGCTGTCTGCCTATGCTTTCTAGATTGATAATGGAGCAGTGTGTGGCGAGATTAGATGTGGCTATGTTCAATGCTATTCTTCGAGAGTCTGCTGATGAAATACCAACTGATCCTGTATCTGATGCCATCAGTGATCCCAAGGTTCTCCCCATTCCACCTGGGAAATTAAGCTTCGGAGCTGGTGCACAGCTAAAAACTGTGATTGGGACCTGGTCTAGATGTTTGACTGATCTATTTGGCATGGATGATAATGACTCAATTGAAGATAAAGCTCACCCTGATAACAATCAAGAGAGACATAATACATCCTTTAGTCTTCTCAATGCACTAAGTGACCTCTTGATGCTTCCTAAGGATATGCTGTTTAGTGCATCCATCAGGAATGAGGTATGTCCGATGTTTACTGCAACACTTATGAAGAAGATTCTTGACAATTTTGTCCCAGATGAGCTTTGCAGTGATCCTGTTCCATCTTATGTTTTTGAGGCTCTGAACTCAGAGAATGCTATGGGAGATGGAATGGAGCATTTCAACAACTTTCCATTCATTGCAGCCCCCATTGTGTATTCACCTCCACCAGCCACTTCCATTGCAAGCATTGTTGGGGAGAAGGGAAGCAAATCTCAACTAAGAAGAAACAGATCTTGTGTTGTTAAAAAGTCATGCACCAGTGATGATGAGCTCAATGAATTGAAGTCCCCATTGTATTCAATATTGTCCAGTGCTTCCTCATCACCATCGGTTTCAGCAAAATCCAGCTTGAAGTTGAAAGAAATTCGCAACCAATCTCCTGTTAGATATGAGCTACTCAGGGATGTGTGGATGAAAAGTGAGTAG 3219 0.4113 MVLGMKGKNRRSLTVQLDFLIHIQEIKPWPPSQSLRSLRSVLIEWKNGECASGSTTLVAPSLGSVIGEGRIEFNESFRLHVTLLRDMSVRSVDSDVFQKNLLEFNLYEPRRDKTVKGQLLGSAIIDLAEYGTLQETLSTNVPMNCKRSYRNTDQSFLFIKIQPVERNRGASTSLKDNHGGDSVSTLMNEEYAEEAEIASFTDDDGSSHSSVAAVSTSIESSGFTSSKLEKNEPFDNTSVNGKEHPLASEKRLGNMNMAQQDTYNKLDRSSYNSKTDVSSAIRSLVNGHASNSPNRNSSSIQKLVSSPSADSSSPSSVCDNLDINYRNGTRRSGHENLDQSFNEKLANYRNIVAEVQKNSNESTFGIYSKHTSSQDSGQFNGKNPASENCDTSECDEKLIGRRKTDKYFMKERGGDKVFHGSVEDINVNEKSNLDWQNGMEDEQLVAQGAKDQALLGSNTYSFGEPNAGMQENILKSERLKNMKSVRLPADSARNAESLGSNHHAELNENGIHEEAQNSGGNRISDRKDAKIHAKEARNGTFDGKIEHLEKKIKMLEGELREAAAIEAALYSVVAEHGSSMSKVHAPARRLSRLYLHVCKENLQGRRAGAAKSSVSGLVLVTKACGNDVPRLTFWLSNTIVLRTIISRTIKDLVPSNPDGSGRRRKIEGEEVHGKITTSLKLKGLYPRKNENTALGYGGFGNWDDPQVFISALEKVEAWIFSRIIESIWWQTLTPHMQHTKLTNKEVGSASRKSYKRTSSSCDQEQGNLSLYIWKKAFREACERLCPIRAGGHECGCLPMLSRLIMEQCVARLDVAMFNAILRESADEIPTDPVSDAISDPKVLPIPPGKLSFGAGAQLKTVIGTWSRCLTDLFGMDDNDSIEDKAHPDNNQERHNTSFSLLNALSDLLMLPKDMLFSASIRNEVCPMFTATLMKKILDNFVPDELCSDPVPSYVFEALNSENAMGDGMEHFNNFPFIAAPIVYSPPPATSIASIVGEKGSKSQLRRNRSCVVKKSCTSDDELNELKSPLYSILSSASSSPSVSAKSSLKLKEIRNQSPVRYELLRDVWMKSE 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01194 1072 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 1 1072 IPR021827 GO:0005643
Cca08g01194 1072 MobiDBLite consensus disorder prediction 371 391 - -
Cca08g01194 1072 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 17 161 IPR019448 -
Cca08g01194 1072 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 1 1072 - -
Cca08g01194 1072 MobiDBLite consensus disorder prediction 286 317 - -
Cca08g01194 1072 Coils Coil 545 565 - -
Cca08g01194 1072 ProSiteProfiles C2 NT-type domain profile. 7 165 IPR019448 -
Cca08g01194 1072 MobiDBLite consensus disorder prediction 506 529 - -
Cca08g01194 1072 MobiDBLite consensus disorder prediction 371 388 - -
Cca08g01194 1072 MobiDBLite consensus disorder prediction 222 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01194 Cca-Chr8 34283960 34291378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01194 - - gmx:100818584 1612.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00871 07 14832547 14840529 Cca08g01194 08 34283960 34291378 PCT