Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00871 ATGAAAGGAAAGAACAGGAGAAGTGGTGGTGCTATTCAGATGGAATACCTCATTCACATTCAGGAGATTAAGCCTTGGCCCCCATCACAGTCTCTAAGAACCCTTCGTTCTGTATTGATACAATGGGAGAACGGTGAACGCTATTCGGGGTCTACCGGTCTTGTTTCGCCGTCCCTTGGTCCTAATTCTAGCGCTGGTGAGGGGAAACTTGAGTTTAATGAGTCATTTAGGCTTCCTGTGACTCTGTCAAGGGATGTATCTATACGAAATAGTACTGCTGATGTGTTCCAGAAGAATTGCTTGGAGTTCCACTTGTATGAGACTCGAAGAGATAAGACTGTTAAAGGGCAGTTGCTGGGGACTGCCATCATAGACTTGGCAGATTGCGGCATACTTAGGGAGACCTTGAGCATTCGCACGCCGTTGAACTGCCAGAGGAACTACAGAAACACAGATCCGCCGCTTTTGTTCATTCAGATTGAGCCTGTTGAAAAGAGTCGCGCTAGGTCCTCATTGAAGGACAGCTTGTTGAAGGAGGTGCCTAAGGAAACTAATGACAGGGAATCTGTGTCAGCATTGATGAATGGAGAGTATGCTGAGGAAGCTGAGATTGCCTCTTTTACTGATGATGATGTTTCCTCTCATTCGTCTGCGGCTGCAGTCACTACTTCCTCTGAGTCTAGTGCGTGCATGCCTCCGGAACATGAAGAGAATGGACCATCTCAAAACAGTGGTAGGAATGACAAGGAGCATCACTTGGCATCAGAGACAAGAGTTGAAAAGTTGAATATCATGCAACAAGATGCATATGAGAGACTGGAGAGGAGTTCTTCCTATGTGTCATCTATGGATGTGTCCTCTGAGGTTGGGAGTCCAGTAAATGGTCATACGTCTATGACAAGCACTCCCAATCATAAATCAATGACAAACCCAAAGCAGGTTGCTTCTTCAAATGCTAATTCTTCCCCAACCTTGGAGGAAAATTCTAAGAGCAAGTCCAAAAGCTATGATCATGAACATTTGGACCAAGAGGACTTTGAAAATGTTGCCAATTGTAGAAATATGGTTACGGGTGTTCAAATAAACAGTAAAGAAAGTGATTTTGACATGTATTCTAGCAATGCTACATCTCTAGATAGTAATGGCCTTGTGGACAAGAATCCAAGCTTTGGTTCAGAAACAAAAGACAAATTAAGTGAGAGATGCGAGGAAGCTGACAAATGTTGTCTGAAGGAGGGGGCAGGTGATAAGCATGGAAATGAAACGTTTCATTATGATAAGCCATACCATTTTGAAGATGAATCAATGGCACAAGATGCAAAAGATCCTGTTCCATTGAGTAGCAATTCATATTCTTTAGGTGGGTCAGATAATGGTATGAAAGGTAATATTCTGAAAAATGAAAGATTAAAGCATGTGAAGTCTGTAAGGTCATCAGCAGACTCAGCCAGGATTATTGGGTCACTTGGTAGCAATCATCTTGGTGAAGTAAAGGAAAATGGTGTTCATGGAGATGCCCAAAACAGTGGAGGGAACATCAGAAGCATTGATAGAAAAGATGCCAAGATTTATCCAAGGGAAGCCAGAAATGCCATTTTAGACAGCAAGGTTGAGCACTTGGAAAACAAGATAAAGATGCTTGAAGGAGAGTTAAGAGAAGCTGCTGCTATTGAGGCTGCTTTATACTCAGTAGTGGCCGAGCATGGAAGCTCCATGAGTAAGGTTCATGCTCCAGCAAGGCGCCTTTCCAGGCTGTATCTCCATGCTTGTAAAGAAAATCTACAAGCAAGAAGGGCTGGGGCAGCTAAAAGTGTTGTTTCAGGATTAACCCTTGTTGCTAAGGCATGTGGAAATGATGTCCCAAGGTTGACATTTTGGTTGTCTAATTCTATTGTGCTGAGAACAATTATAAGCAAAACTACCAAAGAGATGACAGCATCTAATCCTGCTGGGACTAGTACAAGAAGGAAGAATGGAGAAGGGAATGGCAAGATGACACAACCATTAATATGGAGGGGGTTCTCTCCTAGGAAAAGCGAAAATACAGTTTTTGAATATGGAGGCATAAGTAACTGGGATGACCCAAATGTGTTCACATCAGCATTGGAAAAGGTGGAAACTTGGATCTTTTCACGCATTGTGGAATCCATTTGGTGGCAGTCTTTGACTCCACATATGCAGCTTTCTGATGCAAAGGTCACTCGTAAGGATTCAGTGAAAAACTATAAAAATATGCCTAGCTCATTTGATCAAGAGCAGGGAAATTTATCGCTAGATATTTGGAAGAATGCATTTAGAGAAGCCTGTGAAAGGCTTTGTCCAATCCGAGCCGGAGGGCATGAGTGTGGCTGTTTGTCTCTGCTGCCTAGATTGATAATGGAGCAGTGTGTGGCAAGATTAGATGTTGCTATGTTCAATGCCGTTCTTCGGGAATCTGCCGATGATATTCCAACAGATCCTGTATCTGATCCCATCAGCGATCCCAAGGTTCTCCCCATTCCACCTGGCAAATCAAGCTTTGGAGCTGGTGCCCAGCTAAAAACTGCGATTGGTAACTGGTCTAGATGGCTGACTGACCTATTTGGTATGgatgatgatgattcacttgaggatagagatgatgatgaCCTTCACAGTAATGATGGAAGTCAAAATACATCCTTCAAGTCCTTCCATCTTCTTAATGCATTGAGTGACCTCCTGATGCTTCCTAAGGATATGCTGTTAAATGCATCCATCAGGAAAGAGGTGTGCCCAATGTTTAGTGCATCGCTAATTAAGAAGATTCTAGACAATTTTGTCCCTGATGAGTTTTGCCCTGATCCAATTCCCAACGATGTTTTTGAAGCTCTGGACTCTCAGGATGATCTTGAAGATGGAAATGAGTGTATCAACAACTTCCCATGCAATGCAGCTCCCATTGTATATTCGCCTCCACCAGCAGCTACTATTACAAACATTACTGGGGAGATTGGAAGTGGATCTCAGCTGAGAAGAAGCAGATCTTCGGTTGTCAGAAAGTCATATACCAGTGATGATGAGCTCGATGAATTAAATTATCCATTATCTTTAATATTGACTAGTGGCTCCTCACCAGCATCAACAAAGCACAATTGGAAGTGGAAAGAAAGTCGCGATGAATCTGCCATCAGATATGAGCTCCTTAGGGATGTTTGGATGAACAGTGAATGA 3192 0.4248 MKGKNRRSGGAIQMEYLIHIQEIKPWPPSQSLRTLRSVLIQWENGERYSGSTGLVSPSLGPNSSAGEGKLEFNESFRLPVTLSRDVSIRNSTADVFQKNCLEFHLYETRRDKTVKGQLLGTAIIDLADCGILRETLSIRTPLNCQRNYRNTDPPLLFIQIEPVEKSRARSSLKDSLLKEVPKETNDRESVSALMNGEYAEEAEIASFTDDDVSSHSSAAAVTTSSESSACMPPEHEENGPSQNSGRNDKEHHLASETRVEKLNIMQQDAYERLERSSSYVSSMDVSSEVGSPVNGHTSMTSTPNHKSMTNPKQVASSNANSSPTLEENSKSKSKSYDHEHLDQEDFENVANCRNMVTGVQINSKESDFDMYSSNATSLDSNGLVDKNPSFGSETKDKLSERCEEADKCCLKEGAGDKHGNETFHYDKPYHFEDESMAQDAKDPVPLSSNSYSLGGSDNGMKGNILKNERLKHVKSVRSSADSARIIGSLGSNHLGEVKENGVHGDAQNSGGNIRSIDRKDAKIYPREARNAILDSKVEHLENKIKMLEGELREAAAIEAALYSVVAEHGSSMSKVHAPARRLSRLYLHACKENLQARRAGAAKSVVSGLTLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKEMTASNPAGTSTRRKNGEGNGKMTQPLIWRGFSPRKSENTVFEYGGISNWDDPNVFTSALEKVETWIFSRIVESIWWQSLTPHMQLSDAKVTRKDSVKNYKNMPSSFDQEQGNLSLDIWKNAFREACERLCPIRAGGHECGCLSLLPRLIMEQCVARLDVAMFNAVLRESADDIPTDPVSDPISDPKVLPIPPGKSSFGAGAQLKTAIGNWSRWLTDLFGMDDDDSLEDRDDDDLHSNDGSQNTSFKSFHLLNALSDLLMLPKDMLLNASIRKEVCPMFSASLIKKILDNFVPDEFCPDPIPNDVFEALDSQDDLEDGNECINNFPCNAAPIVYSPPPAATITNITGEIGSGSQLRRSRSSVVRKSYTSDDELDELNYPLSLILTSGSSPASTKHNWKWKESRDESAIRYELLRDVWMNSE 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00871 1063 MobiDBLite consensus disorder prediction 281 329 - -
Cca07g00871 1063 ProSiteProfiles C2 NT-type domain profile. 4 164 IPR019448 -
Cca07g00871 1063 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 2 1063 - -
Cca07g00871 1063 MobiDBLite consensus disorder prediction 281 348 - -
Cca07g00871 1063 MobiDBLite consensus disorder prediction 643 668 - -
Cca07g00871 1063 MobiDBLite consensus disorder prediction 643 661 - -
Cca07g00871 1063 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 2 1063 IPR021827 GO:0005643
Cca07g00871 1063 MobiDBLite consensus disorder prediction 209 231 - -
Cca07g00871 1063 MobiDBLite consensus disorder prediction 170 186 - -
Cca07g00871 1063 MobiDBLite consensus disorder prediction 241 258 - -
Cca07g00871 1063 MobiDBLite consensus disorder prediction 170 191 - -
Cca07g00871 1063 MobiDBLite consensus disorder prediction 330 347 - -
Cca07g00871 1063 Coils Coil 530 557 - -
Cca07g00871 1063 MobiDBLite consensus disorder prediction 208 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00871 Cca-Chr7 14832547 14840529 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00871 - - gmx:100783487 1739.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00871 07 14832547 14840529 Cca07g00871 07 14832547 14840529 ECH
Cca07g00871 07 14832547 14840529 Cca08g01194 08 34283960 34291378 PCT