Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01181 atggcagcctcgtccaccatcaacaacttcctcTCCTTCTTCCTGCCAACAAAAccgccgcaaccgtcacctccgccgccgctgccgctccaattgaaccccgccgccgccgccTCTCAGAGGCAGAAACCCTCGCAGCCACTAGTTGCGCAGTACGACCCTTCCGCTTCGGCGGAGTTATCCTCTGTGATATGCCCCTCTCTGGCGTACGCGAACACGCTGTTCTTCCGGTCGCCGTACAACGTGCAGGTGGTGGTGGCCGAGGACGAGCCCGAGGAGCGCCTGCTCAACAGGTTCCGCAGAGAGGTGCTCAAGGCTGGCGTCATTCAGGAGTGTAGGAGGCGAAGGTACTTCGAGAACAAGCAGGAAGAGAAGAAGCGCAAGACGCGTGAAGCTGCCAAGCGTAACCGCAGAAGGAGGCCTATGCTAAAAACTTTGGCACAGAAAAAGCAGGATGTCCCTGCAACCAAGAGGGAGGAGGATGAGGATAACTGGGATCTTCCTGAAGGAGACACCCTGTATTAA 525 0.459 MAASSTINNFLSFFLPTKPPQPSPPPPLPLQLNPAAAASQRQKPSQPLVAQYDPSASAELSSVICPSLAYANTLFFRSPYNVQVVVAEDEPEERLLNRFRREVLKAGVIQECRRRRYFENKQEEKKRKTREAAKRNRRRRPMLKTLAQKKQDVPATKREEDEDNWDLPEGDTLY 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01181 174 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 16 174 - -
Cca08g01181 174 Hamap 30S ribosomal protein S21 [rpsU]. 81 137 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca08g01181 174 TIGRFAM S21p: ribosomal protein bS21 82 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca08g01181 174 Pfam Ribosomal protein S21 83 137 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca08g01181 174 Gene3D Ribosomal protein S8 96 134 IPR038380 -
Cca08g01181 174 MobiDBLite consensus disorder prediction 17 32 - -
Cca08g01181 174 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 16 174 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca08g01181 174 MobiDBLite consensus disorder prediction 14 48 - -
Cca08g01181 174 PRINTS Ribosomal protein S21 family signature 85 93 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca08g01181 174 PRINTS Ribosomal protein S21 family signature 93 102 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca08g01181 174 PRINTS Ribosomal protein S21 family signature 105 115 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca08g01181 174 PRINTS Ribosomal protein S21 family signature 117 127 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca08g01181 174 MobiDBLite consensus disorder prediction 121 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01181 Cca-Chr8 33911139 33915201 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01181 - - gmx:100777605 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00839 07 14208873 14211975 Cca08g01181 08 33911139 33915201 PCT