Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00839 ATGGCAGCCTCATCTTCCTTCTCTACCCTCTTCTCCTTCCTCCTCCCCCCGAAGCCGCACGCTCCTTCCTCCACGCGCTTCGCGCTTCTCAGGCCCAAAGCGCGGGCCCAAGAGGAGGAGCTCTCGGCAGAGTTATCCGCTGTGACGAACCCGTCTCACGCGCACGCCAACACGCTCTTCTTCCGGTCGGCGTACAACGTGCAGGTGGTGGTGGACGAGAACGAGCCCGAGGAGCGGCTGCTCAACCGCTTCCGGAGAGAGGTCATGAAAGCCGGCGTCATCCAAGAGTGCAAGAGGAGACGCTTCTTCGAGAACAAGCAGGAGGAGAAGAAGCGCAAGAACCGCGAAGCTGCCAAGCGTAAAAGCAGGAGCAGGCGTCCTCAATCGAGGTTTCAGGTGCAAAACAAGCAAGATGTTGCACCAACCAAGAAGGAAGAGGATGATGACAACTGGGATCTTCCAGAAGTAGACGCTCCATATATTTCAACCGCATGA 495 0.5758 MAASSSFSTLFSFLLPPKPHAPSSTRFALLRPKARAQEEELSAELSAVTNPSHAHANTLFFRSAYNVQVVVDENEPEERLLNRFRREVMKAGVIQECKRRRFFENKQEEKKRKNREAAKRKSRSRRPQSRFQVQNKQDVAPTKKEEDDDNWDLPEVDAPYISTA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00839 164 Pfam Ribosomal protein S21 68 121 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca07g00839 164 MobiDBLite consensus disorder prediction 104 164 - -
Cca07g00839 164 PRINTS Ribosomal protein S21 family signature 70 78 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca07g00839 164 PRINTS Ribosomal protein S21 family signature 78 87 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca07g00839 164 PRINTS Ribosomal protein S21 family signature 90 100 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca07g00839 164 PRINTS Ribosomal protein S21 family signature 102 112 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca07g00839 164 TIGRFAM S21p: ribosomal protein bS21 67 123 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca07g00839 164 Gene3D Ribosomal protein S8 81 119 IPR038380 -
Cca07g00839 164 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 29 160 IPR001911 GO:0003735|GO:0005840|GO:0006412
Cca07g00839 164 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 29 160 - -
Cca07g00839 164 Hamap 30S ribosomal protein S21 [rpsU]. 66 122 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00839 Cca-Chr7 14208873 14211975 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00839 - - gmx:100780245 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00839 07 14208873 14211975 Cca07g00839 07 14208873 14211975 ECH
Cca07g00839 07 14208873 14211975 Cca08g01181 08 33911139 33915201 PCT