Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01176 ATGTCTGTGAACAATAATAACCCTTCTAAGGGCATTGGAGCCTCTTCCTCATCCTTTGGCAATGCCGGAATACCCTCCAATTCTATACCTGGAAACCCTGGTTTTTCACAGTCCCAAGCCCAGGCCCAGATTCCTGTTGGTTTTCAAGGGCAGTTTCCACTGTcccaagcccatgctattgtccaagctcagtccaaggctcaagcccaggctcaggcccatgcccaagcagctgcggctgctcatgctcaactccaggctcatTTGCAAGCTCAGGGGTTGAGTCTTAATCAGAGCCAGGCTGGTGGTTTGGGGAGTTTGGGGGTGTCGTCGCCTTCGGTTTCGATGCCAGGCAACCTCAGTGGGAAACGGATCCCTCTGAAACCGCCCATTCGGCCTGTTGGATTTTCCCCTCCCAACAGCTTCTCGCCCTTGAGACCAATGGAGCTCACACCTGCCTCGCGGAGGAAGAAGCAGAAGCTCCCTGAGAAACAACTGCAAGATAAAGTGGCTGCTATACTGCCCGAGTCTGCGCTGTATACACAACTTCTTGAGTTTGAGTCTCGTGTTGATGCGGCACTTGTTAGAAAGAAGGCTGACATCCAGGAAGCGCTAAAAAATCCGCCTTGTATTCAGAAAACTCTTCGAATCTATGTGTTTAACACTTTCGCTAATCAAATTCGCACGATTCCAAAGAAGCCAAATGCAGAGCCTCCAACCTGGACGCTGAAGATAGTTGGGAGGATATTGGAAGATGGTGTAGATCCTGATCAGCCGGGTGTAGTTCAGAAGTCATCTCCTTTGTATCCAAAGTTTTCAGCTTTCTTCAAAAGAGTAACCATTTCTTTGGATCAGAGATTGTATCCCGATAATCACATTATTATGTGGGAGAATGCTCGATCACCTGCTCCACAAGAAGGTTTCGAAGTAAAGAGGAAAGGGGATAAAGAATTTTCAGTAAATATACGGCTGGAGATGAATTATGTGCCAGAGAAATTTAAGCTTTCACCAGCTTTGACAGAAGTTCTTGGTATTGAGGTTGATACCCGTCCGAGAATTGTTGCTGCAATCTGGCACTATGTGAAGGCCAGGAAATTGCAAAACCCAAATGACCCTTCTTACTTTCACTGTGATCAGCCACTTCAGAAAGTATTCGGAGAAGAAAAAATGAAGTTTACAATGGTTTCGCAGAAAATATCATCGCATTTGTTCCCCCCACAGCCTATACTTTTGGAGCACAAAATCAAGCTCTCGGGAAACAGTCCAGTTGGGACTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCTATTCAGAGGGAGCTGTCTGCTTTATTGGCTAATGTGGAAAAGAACAAAGAGATTGAGACATGTGATGAAGCAATATGTGGAGTCATTAGAAAAATCCATGAGCACCGTAGGAGACGGGCATTCTTTCTTGGTTTTAGTCAATCGCCAGTAGAATTCATTAATGCTTTGATTGAATCTCAAAGCAGGGATCTGAAACTCGTAGCTGGAGAACCTAGTCGTAATGCGGAAAAAGAGCGTCGATCTGATTTCTTCAACCAACCCTGGGTTGAAGATGCTGTTATTCGTTACCTGAATCGCAAACCAGCCGCCGGAAGTGATGCTCCAGGAAGCACATGA 1647 0.4256 MSVNNNNPSKGIGASSSSFGNAGIPSNSIPGNPGFSQSQAQAQIPVGFQGQFPLSQAHAIVQAQSKAQAQAQAHAQAAAAAHAQLQAHLQAQGLSLNQSQAGGLGSLGVSSPSVSMPGNLSGKRIPLKPPIRPVGFSPPNSFSPLRPMELTPASRRKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALVRKKADIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIVGRILEDGVDPDQPGVVQKSSPLYPKFSAFFKRVTISLDQRLYPDNHIIMWENARSPAPQEGFEVKRKGDKEFSVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDQPLQKVFGEEKMKFTMVSQKISSHLFPPQPILLEHKIKLSGNSPVGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICGVIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKLVAGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPAAGSDAPGST 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01176 548 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 97 540 - -
Cca08g01176 548 Gene3D SWIB/MDM2 domain 325 409 IPR036885 -
Cca08g01176 548 MobiDBLite consensus disorder prediction 109 148 - -
Cca08g01176 548 Pfam SWIB/MDM2 domain 332 403 IPR003121 -
Cca08g01176 548 MobiDBLite consensus disorder prediction 1 42 - -
Cca08g01176 548 SUPERFAMILY SWIB/MDM2 domain 323 413 IPR036885 -
Cca08g01176 548 CDD SWIB_like 335 403 - -
Cca08g01176 548 ProSiteProfiles SWIB/MDM2 domain profile. 328 405 IPR003121 -
Cca08g01176 548 SMART swib_2 329 408 IPR019835 -
Cca08g01176 548 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 97 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01176 Cca-Chr8 33733764 33737355 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca08g01176 SWIB 3.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01176 K11650 - gmx:100776562 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00837 07 14130025 14132444 Cca08g01176 08 33733764 33737355 PCT