Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00837 ATGaacaacaacaacaacaacaacaccaacCCCTCCTCCTCCTCCTTCCCCACCGGATACCCACACTCCCAGTCCCAGATGGCGCCGGCCCAGTACCCCATCTcccaggcccacgccatcgtccaagcccagttccaggctcagctgcaagcccaCGGGCTCACTTTCAACCCAACCGCCAAACGCTTCCCTCCCAAACCCCCCGCCCCGTTCAAGCCAGTGGAACTCCTCCCCACAGCCCGGCGAAAGCGGCCCAAGCCCAACGAGAAACACCTTCCGGAGAAAGCCTCGGCGATTCTCCCTGAATCCGCGTTGTACACGCAGCTTCTCGACCTGGAAGCCCGTTTGGACGCCGCCCTCGCCAGAAAAAAAGTGGACATCCACGAAGCCCTCAAGAACCCACTCTGCGTCCAGAAAACCCTAAGGATCTTCGTCTTCAACACCTTCTCCAACCAGAACCGCTCCGAGCCCCCCACGTGGACGCTCAAGATCATCGGAAGGGTTTTGGACGACGGCGAAGACCCCGACCACCCAGGGTTCTTCCAGAGGCCTTCGCCGTACCCCAAATTCTCTGCTTTCTTCAAGAGAGTGACGATTTCCCTCGACAAGAGGCTTTATCCCGATAGCAACATCATCACGTGGGAGAATTCGCGCTCCTCCGCCACCCACGAGGGTTTCGAAGTGAAGAGAAAGGGGGACCAAGAATTCTCCGCGCAGATTCGCCTCGAGATGAATTACTCGCCGGAGAAGTTCATGCTCTCGCCGGCGCTGCGCGAGGTGCTTGGGGTTCAGGTGGACACGCGGGCCAGGATTGTTTCCGCGATATGGCATTATGTGAAGGCCAGGAAACTGCAGAACCAGAGTGATCCTTCGTTCTTTCACTGTGATCAGCCTCTTCAGAATGTGTTTGGGGAGGATAAGGTTAAGTTTTCCATGGTTTCGCAGAAGATTTCGCACCATTTGTTCCCTCCTCAGGTTATACTTTTGGAGCATAAGATCGTGCTCTCTGGGAGTAGCCCTGTTGGATCTGCTTGCTATGATGTTATGGTTGATGTTCCTTTTCCCATTCAGAGGGAGTTGTCTGCTTTGGTGGCTAATGTGGACAAGAACAGAGAGGTTGATGCTTGTGATGAATCCATATGTGGAATCATTAGGAAGATACATGAGCACCGAAGGAGGCGAGCGTTCTTTGTTGGGTTTAGTCAATCTCCTCTGGAGTTCATTAAGGCCTTGGTGGAATCTCAAAACAAGGATATGAAAATTTTGGTTGGAGAATCTGGTTCTGGCCACAATGCTGATAAAGAGAGAAAATCAGATTTCTTTAAGCAACCTTGGGTTGATGATGCCATTGTTCGCTTTTTGAATCGCAAACCAGCCGTTGGAAGCAATGTTCCAGGGAGCACATGA 1407 0.4968 MNNNNNNNTNPSSSSFPTGYPHSQSQMAPAQYPISQAHAIVQAQFQAQLQAHGLTFNPTAKRFPPKPPAPFKPVELLPTARRKRPKPNEKHLPEKASAILPESALYTQLLDLEARLDAALARKKVDIHEALKNPLCVQKTLRIFVFNTFSNQNRSEPPTWTLKIIGRVLDDGEDPDHPGFFQRPSPYPKFSAFFKRVTISLDKRLYPDSNIITWENSRSSATHEGFEVKRKGDQEFSAQIRLEMNYSPEKFMLSPALREVLGVQVDTRARIVSAIWHYVKARKLQNQSDPSFFHCDQPLQNVFGEDKVKFSMVSQKISHHLFPPQVILLEHKIVLSGSSPVGSACYDVMVDVPFPIQRELSALVANVDKNREVDACDESICGIIRKIHEHRRRRAFFVGFSQSPLEFIKALVESQNKDMKILVGESGSGHNADKERKSDFFKQPWVDDAIVRFLNRKPAVGSNVPGST 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00837 468 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 69 465 - -
Cca07g00837 468 SUPERFAMILY SWIB/MDM2 domain 241 330 IPR036885 -
Cca07g00837 468 Pfam SWIB/MDM2 domain 250 321 IPR003121 -
Cca07g00837 468 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 69 465 - -
Cca07g00837 468 SMART swib_2 247 326 IPR019835 -
Cca07g00837 468 CDD SWIB_like 253 321 - -
Cca07g00837 468 Gene3D SWIB/MDM2 domain 243 326 IPR036885 -
Cca07g00837 468 MobiDBLite consensus disorder prediction 1 29 - -
Cca07g00837 468 ProSiteProfiles SWIB/MDM2 domain profile. 246 323 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00837 Cca-Chr7 14130025 14132444 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca07g00837 SWIB 4.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00837 K11650 - gmx:100785069 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00837 07 14130025 14132444 Cca07g00837 07 14130025 14132444 ECH
Cca07g00837 07 14130025 14132444 Cca08g01176 08 33733764 33737355 PCT