Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01036 ATGTTGAGGGTTGCAGCTAGGAGGCTTTCCTCTCTCTCCTCCTCGCCGTGCCGCGCCAACCACGCCGCTTCGGCATGCCTCTCTTCAAACGACGTCGTTCGTGGCCGCAGATCCGCTCCTTGCTCCGAACCAAACACCTTCCTTCTCCCTTTCAGAGGCTTTGCTACTGAATCACTAATCCACTCAAAAGAAAACAGCATTATTCCTGAGATTCCAGCAACTGTTACTGCTGTTAAGAACCCTACCTCTAAGATTGTTTATGATGAGCACAACCATGAACGATTTCCCCCAGGTGATCCAAACAAGAGGGCATTTGCCTACTTTGTCCTTACCGGTGGAAGGTTCATTTATGCCTCTCTGGTCCGTCTCCTTGTCCTCAAGTTTGTGCTTAGCATGTCTGCCAGTAAGGATGTTCTTGCTCTGGCCTCACTTGAGGTTGATCTCTCCAGCATTGAGCCCGGCACTACAGTGACTGTTAAGTGGCGTGGAAAGCCGGTGTTCATAAGGCGCCGAACTGAGGATGATATCAAGCTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGATCCCCAACAGGATGCAGATAGAGTGAAGGACCCAGAATGGCTCATTGTGATTGGAGTTTGCACACATTTGGGTTGCATTCCATTGCCAAATGCTGGTGACTTTGGTGGATGGTTTTGCCCATGCCATGGCTCACATTATGATATTTCTGGAAGAATTAGGAAGGGGCCAGCACCATACAATCTAGAGGTTCCTACCTATACCTTCTTGGAGGAAAACAAGTTGATGATTGGTTGA 801 0.4881 MLRVAARRLSSLSSSPCRANHAASACLSSNDVVRGRRSAPCSEPNTFLLPFRGFATESLIHSKENSIIPEIPATVTAVKNPTSKIVYDEHNHERFPPGDPNKRAFAYFVLTGGRFIYASLVRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVGSLRDPQQDADRVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEENKLMIG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01036 266 CDD Rieske_cytochrome_bc1 143 266 - -
Cca08g01036 266 SUPERFAMILY ISP domain 128 265 IPR036922 GO:0051537
Cca08g01036 266 Gene3D - 135 266 IPR036922 GO:0051537
Cca08g01036 266 PRINTS Rieske 2Fe-2S subunit signature 204 215 IPR005805 GO:0016020|GO:0051537
Cca08g01036 266 PRINTS Rieske 2Fe-2S subunit signature 226 238 IPR005805 GO:0016020|GO:0051537
Cca08g01036 266 PRINTS Rieske 2Fe-2S subunit signature 238 250 IPR005805 GO:0016020|GO:0051537
Cca08g01036 266 Pfam Ubiquinol cytochrome reductase transmembrane region 88 137 IPR004192 GO:0008121
Cca08g01036 266 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 121 266 IPR006317 GO:0008121
Cca08g01036 266 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 266 - -
Cca08g01036 266 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 176 264 IPR017941 GO:0051537
Cca08g01036 266 SUPERFAMILY ISP transmembrane anchor 82 139 - -
Cca08g01036 266 Pfam Rieske [2Fe-2S] domain 149 252 IPR017941 GO:0051537
Cca08g01036 266 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 266 IPR014349 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01036 Cca-Chr8 26179149 26182452 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01036 K00411 - gmx:100799135 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00739 07 11372570 11375257 Cca08g01036 08 26179149 26182452 PCT