Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00739 ATGTTGAGGCTCGCAGCTAAGAGGCTTTCCTCTCTCTCCTCCACTCCGTCGAGGGCCAACCACGCCGCCGCCGCGTTTCTCTCCCGGAGCCCCGCCGCACCGCCCTCCGAGGAACGCAGATCCGACCCGTTTTCGCCCCGACCCCAATTCTTCCTTCCCATCAGAGGTTTTGCTACTGAAACCCTGATCCACACCAAAGAAAACAGTATTATTCCTGAAATTCCTGCAACTGTATCAGCTGTTAAAAACCCTTCATCAAAGATTGTATATGATGAACACAACCACGAACGATTTCCTCCTGGTGACCCAAGCAAAAGGGCATTTGCCTACTTTGTCCTATCTGGTGGTAGATTTATCTATGCCTCTCTGGTTCGTCTCCTTGTCCTCAAGTTTGTGCTCAGCATGTCAGCAAGTAAGGATGTTCTTGCTCTGGCTTCACTTGAAGTTGATCTCTCTAGCATTGAGCCAGGCACCACTGTGACTGTTAAGTGGCGTGGAAAGCCAGTATTCATCAGGCGCAGAACAGAAGATGATATTAAGCTGGCAAACACCGTTGATGTTGGATCTCTTCGTGATCCCCAGCAGGATGCCGAAAGAGTCAAGGACCCAGAATGGCTCATTGTGATTGGGGTTTGCACACATTTGGGTTGCATTCCCTTGCCAAATGCTGGTGACTTTGGTGGATGGTTTTGCCCATGCCATGGTTCACATTATGATATTTCTGGCAGAATTAGGAAGGGACCAGCACCATACAATCTGGAGGTACCAACTTATACCTTCTTGGATGAGAACAAGTTGTTGATTGGTTGA 810 0.4901 MLRLAAKRLSSLSSTPSRANHAAAAFLSRSPAAPPSEERRSDPFSPRPQFFLPIRGFATETLIHTKENSIIPEIPATVSAVKNPSSKIVYDEHNHERFPPGDPSKRAFAYFVLSGGRFIYASLVRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANTVDVGSLRDPQQDAERVKDPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLDENKLLIG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00739 269 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 199 267 IPR017941 GO:0051537
Cca07g00739 269 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 124 269 IPR006317 GO:0008121
Cca07g00739 269 Pfam Ubiquinol cytochrome reductase transmembrane region 94 140 IPR004192 GO:0008121
Cca07g00739 269 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 269 - -
Cca07g00739 269 Gene3D - 138 269 IPR036922 GO:0051537
Cca07g00739 269 SUPERFAMILY ISP transmembrane anchor 86 142 - -
Cca07g00739 269 PRINTS Rieske 2Fe-2S subunit signature 207 218 IPR005805 GO:0016020|GO:0051537
Cca07g00739 269 PRINTS Rieske 2Fe-2S subunit signature 229 241 IPR005805 GO:0016020|GO:0051537
Cca07g00739 269 PRINTS Rieske 2Fe-2S subunit signature 241 253 IPR005805 GO:0016020|GO:0051537
Cca07g00739 269 SUPERFAMILY ISP domain 131 267 IPR036922 GO:0051537
Cca07g00739 269 MobiDBLite consensus disorder prediction 1 48 - -
Cca07g00739 269 CDD Rieske_cytochrome_bc1 146 269 - -
Cca07g00739 269 Pfam Rieske [2Fe-2S] domain 152 255 IPR017941 GO:0051537
Cca07g00739 269 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 269 IPR014349 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00739 Cca-Chr7 11372570 11375257 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00739 K00411 - gmx:100806917 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00739 07 11372570 11375257 Cca07g00739 07 11372570 11375257 ECH
Cca07g00739 07 11372570 11375257 Cca08g01036 08 26179149 26182452 PCT