Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00988 ATGGGAGCGAGTCGGAAACTTCAGGGCGAAATTGATCGTGTTCTTAAGAAGGTTCAGGAAGGCGTCGATGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGACAATGCGAACCAGAAGGAGAAGTTCGAGGCAGACCTGAAGAAGGAGATTAAGAAGCTGCAGAGGTATAGGGACCAGATTAAGACTTGGATTCAGTCCAGTGAGATCAAAGACAAGAAGTCCGCTGAATTCAAAGACAAGAAGGTTAGTGCCTCGTATGAGCAGGCTCTAGTGGATGCCCGCAAACTTATTGAGCGTGAAATGGAAAGATTCAAGATTTGTGAGAAGGAGACAAAGACAAAAGCATTCTCCAAAGAAGGCTTGGGGCAACAGCCTAAAACTGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAGTTAGAATCTCAGATTGATAGCTTTGAAGCTGAACTTGAAGGACTTTCTGTAAAGAAAGGAAAGAACAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGACACAAGGCTCATATAAAGAAATGTGAATTTATCTTGAGGCTACTAGATAATGATGAACTAAGTCCAGAACAGGTTAATGATGTAAAAGATTTCCTGGATGACTATGTAGAGCGTAATCAGGAGGACTTCGAAGAATTTAGTGATGTTGATGACCTATATAGTTCATTACCCTTAGACAAGGTGGAGTCACTTGAAGATATCGTTACAATTCCCCCTGGTCCTGCTAAGGTTGCACCTGTTCTTAGCTTGAAGCCTTCTGTGGCAGCATCAGCTTCAGCATCACAAACATCTGAGCAAGCTGATGATACTGCATCCCAGGATAGCAATTCTGATATTGGTGCAAGAACTCCACCTCCTAAAAGTAGTGTAGTTAGTCCTACTACTACAACACCAACAGGGAATCCTGCTTCTCCTGTTTCTATGAATGTTCCAGTGCCTAACTTGTCGAGTGCACCAGCTATTGTAACAGTCATGCCTGGTTCAAATTCTGTTCGGAGCTCCTTGGAGATTAACAGTGTTGTCAGTGCTTCATCTTTTGTAAATCATTCTAGCACTGTGAAGGAGGAAGATATTAGTTTCCCTGGCCAAAGACCATCTCCATCGCTTTCTGATGTTGCACTTGTAAGGAACATCAGCAGAAACAGCCTATCAAATCAAGCAACAAATAACATACCACTTGTTTCTGGCAATATGGTTTCCAGCAATGGGCCGGTTGGTTCAATCCCTTCAGCATCTGAAATAACCAAGAGAAACATATTGGTAGCTGACGATCGACTTGGAAGCAATGGGATGGTGCAGCCTCTTGTATCCCCCTTAAGTAACAGAATCGTGCCTCAGGTTGCAAGGGCTAATGATGGAACTTCTTCAGTTGACTCTAGTAATGTCAACGAAGCTGCAACTGTCTCTGGGAGAGTTTTCTCCCCTTCTGCTGTTCCTGGCATGCAATGGAGACCTGGAAGCCCCTTCCAGAACCAGAATGATGGGCAGATTCGTGCAAGACCTGAAATAGTTCCTGATCAAAGGGAAAGATATTTGCAGAAGTATCAACAAGTGCAGCAACAAGTGCAGCAGCAAGGTCAAGGTTCCCTTCTTAATATGCCAACTTTTGCAGGAGGGAATCATAAGCAGTTTTCTGCTCAGCAACAAAATCCTCTCTTACAGCAGTTCAACGCTCAAGGCTCTTCTGTTACTTCTCAATCTAGTGTGGGACTTGGAGTCCAGTCACCAGGTCTTAGTGGCATTGCTTCCACCTCATTACCACAGCCACCCAATTCTGTCCATTCCCCATCTAGCCAACAATCATTGCTGTCAGCTGTTTCTAAAGATTCAGATCTTGGCAATTCTAAGGTTGAAGAGCCGCAACATATTTTTCCTGATGATTCGGGGACTGAATCTACTACTAGTACTGGGATTGGCAAGAATTTCATGAATGAAGATGAGTTGAAATCCACATATGCTGTTGACTCTCCTGTAGGAGTACCTGCTTCTATTCCAGAGCCTGCTCAGACTTCTAGAGATATTGATTTGTCTCCTGGCCAACCTTTACAATCAAATCAGCGTACTGCTAACCTTGGTGTTATAGGAAGAAGTTCTATTGATCTTGGAACTGGTGACAACTTTAGTGCATCAATCGCTAATTCTGGTGGAGTTCGTGATCAGTTATATAATTTGCAGATGCTTGAGGCATCTCACCTCAAACTTCCGCAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTAAACACCCTACGATAACACCACCTAGTTATCCTCAAGTACAGGCACCTATTGTTAATAATCCTGCCTTTTGGGAGAGAGTAGGTCTCGAACCATATGGAACTGATACCCTGTTCTTTGCATTTTACTATCAACAGAACACTTACCAACAATATATGGCTGCAAAAGAGCTTAAGAAGCAGTCATGGAGATATCACCGGAAATATAACACATGGTTTCAACGGCATGAAGAGCCAAAAGTTGCAACAGATGAATACGAGCAGGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGATCTGCAGCATGGGTGGTGTCAAAGAATCAAAACTGACTTCACTTTTGAATATAACTATCTCGAAGATGAGCCTATTGTCTAG 2682 0.4321 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKSAEFKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDDLYSSLPLDKVESLEDIVTIPPGPAKVAPVLSLKPSVAASASASQTSEQADDTASQDSNSDIGARTPPPKSSVVSPTTTTPTGNPASPVSMNVPVPNLSSAPAIVTVMPGSNSVRSSLEINSVVSASSFVNHSSTVKEEDISFPGQRPSPSLSDVALVRNISRNSLSNQATNNIPLVSGNMVSSNGPVGSIPSASEITKRNILVADDRLGSNGMVQPLVSPLSNRIVPQVARANDGTSSVDSSNVNEAATVSGRVFSPSAVPGMQWRPGSPFQNQNDGQIRARPEIVPDQRERYLQKYQQVQQQVQQQGQGSLLNMPTFAGGNHKQFSAQQQNPLLQQFNAQGSSVTSQSSVGLGVQSPGLSGIASTSLPQPPNSVHSPSSQQSLLSAVSKDSDLGNSKVEEPQHIFPDDSGTESTTSTGIGKNFMNEDELKSTYAVDSPVGVPASIPEPAQTSRDIDLSPGQPLQSNQRTANLGVIGRSSIDLGTGDNFSASIANSGGVRDQLYNLQMLEASHLKLPQPKDSERPRTYTPKHPTITPPSYPQVQAPIVNNPAFWERVGLEPYGTDTLFFAFYYQQNTYQQYMAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTDFTFEYNYLEDEPIV 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00988 893 Coils Coil 41 61 - -
Cca08g00988 893 MobiDBLite consensus disorder prediction 276 328 - -
Cca08g00988 893 MobiDBLite consensus disorder prediction 691 707 - -
Cca08g00988 893 Gene3D - 733 888 IPR038635 -
Cca08g00988 893 MobiDBLite consensus disorder prediction 582 629 - -
Cca08g00988 893 Coils Coil 147 167 - -
Cca08g00988 893 PANTHER BNAA10G16600D PROTEIN 1 891 - -
Cca08g00988 893 MobiDBLite consensus disorder prediction 532 560 - -
Cca08g00988 893 Pfam NOT2 / NOT3 / NOT5 family 748 887 IPR007282 GO:0006355
Cca08g00988 893 PANTHER CCR4 NOT-RELATED 1 891 IPR040168 GO:0030015
Cca08g00988 893 MobiDBLite consensus disorder prediction 497 516 - -
Cca08g00988 893 MobiDBLite consensus disorder prediction 753 778 - -
Cca08g00988 893 MobiDBLite consensus disorder prediction 118 139 - -
Cca08g00988 893 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 244 IPR007207 GO:0005634|GO:0006355
Cca08g00988 893 MobiDBLite consensus disorder prediction 582 662 - -
Cca08g00988 893 MobiDBLite consensus disorder prediction 674 707 - -
Cca08g00988 893 MobiDBLite consensus disorder prediction 644 659 - -
Cca08g00988 893 PIRSF NOT_su_3_5 1 893 IPR012270 GO:0006355|GO:0030015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00988 Cca-Chr8 23747223 23766088 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00988 K12580 - gmx:100780204 1524.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00676 07 9816191 9829138 Cca08g00988 08 23747223 23766088 PCT