Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00676 ATGGGTGCGAGTCGAAAGCTTCAGGGAGAGATAGATCGTGTTCTTAAGAAGGTCCAGGAAGGTGTTGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGACAATGCTAACCAGAAGGAGAAATTTGAAGCAGACCTCAAGAAGGAAATTAAGAAGCTACAAAGGTATCGGGACCAAATTAAGACTTGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCATATGAGCAGGCTCTGGTGGATGCCCGCAAGCTAATTGAGCGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACTAAGACCAAAGCATTCTCCAAGGAAGGATTAGGTCAACAGCCGAAGACTGATCCAAAAGAGAAGGCTAAATCGGAGACAAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCCCAGATTGATAGCTTTGAGGCGGAGCTTGAAGGGCTTTCTGTCAAAAAAGGAAAGAGCAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGCAGGTTAATGATGTCAAAGATTTCTTGGACGACTATGTCGAGCGTAATCAGGAGGATTTCGATGATTTTACTGATGTTGATGACCTATACAGTTCATTACCTTTAGACAAGGTGGAGACCCTAGAAGATCTTGTTACAATTCCCCCTGGTATTTCTAAGGTAGCACCTAGTCTTAGCTTGAAGAATTCTTCGAcagtatcagtatcacaatcagcatctgcatctgcatcaCAAACATCTGAGCAAGCTGACGACACAGCTTCCCAGGATAGCAATTCTGACATTGTTGCCAAAACTCCACCTCCTAAAAGTGCTGGAATTAGTTCTGCTTCTTCAACTCCTGCTGGCAACCATAGTTCCCCTGTTTCTGTGAATGTATCTGGTCATAACTTGTCTAGTCCACCTGCTGTTGCAGCCCTACCTGGTTCAAATTCTGTGCGGAATGTCATAGAGAATACCAATGTTTCCAATTCATCTTCTGTAAATCAATCTACCTCTTCAAAAGAAGAAGAGATTAATAGCTTCCCTAGCAGGAGACCATCTCCATCACTTTCTGATGCATCACTTTTGAGGGGCAGAAATGGACTGTCAAATCAAGCAACAGCCAGTATTCCTCTTGGTTCTGGAAACATGGTTTCTGGCAATGGGGCCCTAGGATCAGTCCCCACAGCCTCTGAAATAGCTAAAAGGAACATATTGGGAGCTGATGATAGACTTGGAAGTAGTGGGATGGTGCAGCCTCTTGTATCCCCGCTAAGTAATAGATTGATCTTGCCTCAGGCTGCAAAGGCTAATGATGGAACAGTTTCAGTTGACTCTAGTACTGTTAATGAAGCTTCAGCTGTATCTGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGAAGCAGGCCAGCTTCGTGGAAGAACTGAAATTGCTCCTGATCAAAGGGAAAAGTTTTTACAGAAGTATCAGCAAGTGCAGCAAGGGCACAGTACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAACAGCAAAATCCCCTTTTACAGCAGTCCACAAGTCTCAGTGGTATTTCTTCTGCATCACTACAGCAGCCACCCAATTCTGTCCATTCCCCCTCTAGTCAACAGCCATTGGTGCCAGGTGTTTCTAAAGATGCAGATGTTGGCAATTCTAAGATTGAAGAACAGCAGCAACATCAGAATTTTCCTGATGAGTCAACAGCTGAATCTACTTCTAGCTCTGGGATTGGCAAGAATATCATAAACGAAGATGAATCAAAATCAGCATATGCCGTAGATTCTCCTGCAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACATCCAGGGACATCGATTTGTCTCCTGGCCAACCATTACAATCCAATCAACCTATTGCCAACCTAGGTGTCATTGGAAGAAGAAATGGTGCTGAACTTGGAACCATTGGTGATAGTTTTAGTGGATCGAGTCTCACTTCAAAATTCCACTACCCAAAGACTCAGAACGTCCCAGGACTTATACTCCTAAGCATCCGGCAATTAGTAGGTCTTGAACCATTTGGCACTGATACTCTGTTCTTTGCATTTTATTATCAACAGAATACTTACCAACAATATTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAATACTTGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCTACCGATGAATATGAGCAGGGAACATATGTGTACTTTGATTTCCATATTGCAAATGATGACATGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAGTATAATTATCTTGAAGATGATCTTCTTGTATAG 2496 0.4227 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFTDVDDLYSSLPLDKVETLEDLVTIPPGISKVAPSLSLKNSSTVSVSQSASASASQTSEQADDTASQDSNSDIVAKTPPPKSAGISSASSTPAGNHSSPVSVNVSGHNLSSPPAVAALPGSNSVRNVIENTNVSNSSSVNQSTSSKEEEINSFPSRRPSPSLSDASLLRGRNGLSNQATASIPLGSGNMVSGNGALGSVPTASEIAKRNILGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGTVSVDSSTVNEASAVSGRVFSPSVVPGMQWRPGSPFQNQNEAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPSLVGGNHKQFSAQQQNPLLQQSTSLSGISSASLQQPPNSVHSPSSQQPLVPGVSKDADVGNSKIEEQQQHQNFPDESTAESTSSSGIGKNIINEDESKSAYAVDSPAGVSASLPESAQTSRDIDLSPGQPLQSNQPIANLGVIGRRNGAELGTIGDSFSGSSLTSKFHYPKTQNVPGLILLSIRQLVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00676 831 Coils Coil 41 61 - -
Cca07g00676 831 Pfam NOT2 / NOT3 / NOT5 family 732 825 IPR007282 GO:0006355
Cca07g00676 831 PANTHER BNAA10G16600D PROTEIN 1 709 - -
Cca07g00676 831 PANTHER BNAA10G16600D PROTEIN 736 831 - -
Cca07g00676 831 MobiDBLite consensus disorder prediction 655 678 - -
Cca07g00676 831 MobiDBLite consensus disorder prediction 608 636 - -
Cca07g00676 831 Coils Coil 139 159 - -
Cca07g00676 831 MobiDBLite consensus disorder prediction 566 595 - -
Cca07g00676 831 MobiDBLite consensus disorder prediction 541 560 - -
Cca07g00676 831 PANTHER CCR4 NOT-RELATED 736 831 IPR040168 GO:0030015
Cca07g00676 831 PANTHER CCR4 NOT-RELATED 1 709 IPR040168 GO:0030015
Cca07g00676 831 MobiDBLite consensus disorder prediction 353 390 - -
Cca07g00676 831 MobiDBLite consensus disorder prediction 110 131 - -
Cca07g00676 831 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Cca07g00676 831 MobiDBLite consensus disorder prediction 566 678 - -
Cca07g00676 831 MobiDBLite consensus disorder prediction 271 328 - -
Cca07g00676 831 PIRSF NOT_su_3_5 1 720 IPR012270 GO:0006355|GO:0030015
Cca07g00676 831 PIRSF NOT_su_3_5 710 831 IPR012270 GO:0006355|GO:0030015
Cca07g00676 831 Gene3D - 697 826 IPR038635 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00676 Cca-Chr7 9816191 9829138 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00676 K12580 - gmx:100783415 1350.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00676 07 9816191 9829138 Cca08g00988 08 23747223 23766088 PCT