Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00856 ATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAAATGATTTGCTTCAGCTATTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAGGCTCTTCTTCAAATGCAAGATATTCCTTCTGCAGTTAATGCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGAAATGTTTATGTCCAGTTTTCCTCACATCAAGAACTAACTACAATGGATCAAAATCAAGCACGAGAAGATGAGCCAAATCGAATTCTCTTAGTTACAGTTCATCACATGCTGTATCCTATAACAGCGGATGTGCTACATCAAGTATTTTCTCCCCATGGATATGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCCCGTCAAAGTGCTGTTACTGCCAGAAGTACTCTTCAGGGACGCAATATTTATGACGGTTGTTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAACTTCAAGTGAACTATAATAATGATCGTTCAAGGGACTTCACAAACCCAAATTTGCCTACAGAGCAGAAAGGTCGATCTTCACAACCGGGATATGGTGATGCAGGACCCATGTATTCTGGAGCCAGGGCAGGTGGATTCTCACAGATGGCCAATGCTGCAGCAATTGCAGCTGCCTTTGGAGGAGGTTTGCCTCCTGGCATAACTGGAACAAATGAAAGGTGTACAATTCTTGTCGCAAATCTCAATCCTGATAGAATAGATGAGGATAAACTGTTCAACTTGTTCTCCATTTATGGGAACATTGTCAGAATTAAACTTCTCCGAAATAAGCCAGATCATGCACTTATCCAGATGGGTGATGGTTTCCAAGCTGAATTGGCGGTACACTTTCTGAAGGGAGCCATGTTGTTTGGCAAGCGGTTGGAGGTCAACTATTCAAAGCATGCAAACATTACACAAGGTGCTGATACACATGAGTATGCCAATTCAAATCTCAATCGATTCAATCGTAATGCTGCTAAGAACTACCGATACTGCTGCTCTCCAACGAAGATGATCCACTTGTCCACTCTCCCACAAGACATAACTGAAGAGGAGATCGTGAGCCTCTTGGAGGAGCATGGTACCATTGTCAACAGCAAGGTCTTTGAGATGAATGGTAAAAAACAGGCTCTTGTTCAGTTTGAGACCGAGGAGCAGGCTACCGAAGCCCTTGTGTGCAAGCATGCAAGTCCACTTTCTGGATCGGTGGTTCGCATCTCCTTCTCCCAGTTGCAGAATATATGA 1320 0.4326 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMDQNQAREDEPNRILLVTVHHMLYPITADVLHQVFSPHGYVEKIVTFQKSAGFQALIQYQSRQSAVTARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQPGYGDAGPMYSGARAGGFSQMANAAAIAAAFGGGLPPGITGTNERCTILVANLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKHANITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLLEEHGTIVNSKVFEMNGKKQALVQFETEEQATEALVCKHASPLSGSVVRISFSQLQNI 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00856 439 MobiDBLite consensus disorder prediction 186 205 - -
Cca08g00856 439 CDD RRM1_PTBPH3 6 80 IPR034795 -
Cca08g00856 439 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Cca08g00856 439 MobiDBLite consensus disorder prediction 186 212 - -
Cca08g00856 439 Gene3D - 347 439 IPR012677 -
Cca08g00856 439 Gene3D - 1 97 IPR012677 -
Cca08g00856 439 CDD RRM3_PTBPH3 251 326 IPR034797 -
Cca08g00856 439 SMART rrm1_1 363 432 IPR000504 GO:0003723
Cca08g00856 439 SMART rrm1_1 253 322 IPR000504 GO:0003723
Cca08g00856 439 SMART rrm1_1 7 76 IPR000504 GO:0003723
Cca08g00856 439 SMART rrm1_1 101 170 IPR000504 GO:0003723
Cca08g00856 439 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 438 - -
Cca08g00856 439 Pfam RRM-like domain 97 174 IPR021790 -
Cca08g00856 439 Gene3D - 98 201 IPR012677 -
Cca08g00856 439 SUPERFAMILY RNA-binding domain, RBD 250 433 IPR035979 GO:0003676
Cca08g00856 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Cca08g00856 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 428 IPR000504 GO:0003723
Cca08g00856 439 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 438 - -
Cca08g00856 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 436 IPR000504 GO:0003723
Cca08g00856 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Cca08g00856 439 CDD RRM4_PTBPH3 355 433 - -
Cca08g00856 439 Gene3D - 249 346 IPR012677 -
Cca08g00856 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 339 - -
Cca08g00856 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Cca08g00856 439 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00856 Cca-Chr8 19054302 19062570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00856 K14948 - gmx:100791570 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00856 08 19054302 19062570 Cca02g02150 02 41746248 41754144 PCT