Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02150 ATGACTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCACGAGATATCTGAAAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTAGTTATGCTGCGTGCAAAAAATCAGGCCCTTGTTCAAATGCAAGATGTTCCTTCTGCAGTTAATGCTTTACAGTTTTATGCAAATATTCAGCCAAGCATTAGGGGAAGGAATGTTTATGTTCAGTTTTCCTCACATCAGGAACTAACAACAATGGATCAAAGTCAGGGACGAGGAGAAGAGCCAAACCGAATTCTCTTAGTTACGATTCATCACATGCTGTATCCTATAACAGTGGATGTTCTGTATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAGGCTCTCATCCAGTATCAATCACATCAAAGTGCTGTTATGGCAAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAATCTTGATGAATTACAAGTGAACTACAATAATGACCGATCAAGGGACTTCACAAACCCAAATCTCCCTACAGAGCAGAAAGGCAGGCCTTCACAACCTGGATATGGTGATGGAGGAAACATGTATGCTGCTCAAGGTTCTGGAGCCAGGACAGCCGGATTTCCGCAGATGGGAAATTCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAATTCTTGTATCAAATCTGAATCCTGATAGAATTGACGAGGAAAAACTATTCAACTTGTTCTCTATTTATGGGAATATTGTGAGAATTAAACTTCTGCGAAATAAACCAGATCATGCACTTATCCAGATGGGAGATGGCTTTCAAGCTGAATTAGCTGTACACTTTCTGAAGGGAGCAATGTTGTTCGAGAAGCGATTAGAGGTGAACTTCTCCAAGCATCCAAACATAACCCAAGGTGCTGACACACATGAATACGTTAACTCAAATCTCAACCGTTTCAACCGTAACGCAGCTAAGAATTACCGGTATTGCTGCTCCCCAACAAAGATGATCCATTTGTCAACACTCCCACAAGACATCACTGAAGAGGAGATTGTGAGCCTAGTAGAGGAGCATGGAACAATTACTAACAGCAAAGTGTTTGAGATGAATGGGAAAAAACAGGCTCTGGTTCAGTTTGAGAATGAGGAGCAGGCTACTGAAGCCCTTGTGTGCAAGCATGCCAGCACACTTTCTGGCTCAGTAATTCGTATCTCCTTTTCACAGTTGCAGAATATATGA 1332 0.4242 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVPSAVNALQFYANIQPSIRGRNVYVQFSSHQELTTMDQSQGRGEEPNRILLVTIHHMLYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSHQSAVMARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYAAQGSGARTAGFPQMGNSAAIAAAFGGGLPPGITGTNDRCTILVSNLNPDRIDEEKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFEKRLEVNFSKHPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIVSLVEEHGTITNSKVFEMNGKKQALVQFENEEQATEALVCKHASTLSGSVIRISFSQLQNI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02150 443 MobiDBLite consensus disorder prediction 185 216 - -
Cca02g02150 443 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Cca02g02150 443 Gene3D - 253 348 IPR012677 -
Cca02g02150 443 SUPERFAMILY RNA-binding domain, RBD 254 439 IPR035979 GO:0003676
Cca02g02150 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Cca02g02150 443 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 442 - -
Cca02g02150 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 341 - -
Cca02g02150 443 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Cca02g02150 443 CDD RRM3_PTBPH3 255 330 IPR034797 -
Cca02g02150 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Cca02g02150 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 434 IPR000504 GO:0003723
Cca02g02150 443 Gene3D - 349 443 IPR012677 -
Cca02g02150 443 Gene3D - 1 98 IPR012677 -
Cca02g02150 443 MobiDBLite consensus disorder prediction 185 202 - -
Cca02g02150 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Cca02g02150 443 Gene3D - 99 201 IPR012677 -
Cca02g02150 443 CDD RRM4_PTBPH3 359 437 - -
Cca02g02150 443 SMART rrm1_1 101 170 IPR000504 GO:0003723
Cca02g02150 443 SMART rrm1_1 367 436 IPR000504 GO:0003723
Cca02g02150 443 SMART rrm1_1 257 326 IPR000504 GO:0003723
Cca02g02150 443 SMART rrm1_1 7 76 IPR000504 GO:0003723
Cca02g02150 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Cca02g02150 443 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 442 - -
Cca02g02150 443 Pfam RRM-like domain 94 174 IPR021790 -
Cca02g02150 443 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02150 Cca-Chr2 41746248 41754144 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02150 K14948 - gmx:100819672 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02150 02 41746248 41754144 Cca02g02150 02 41746248 41754144 ECH
Cca08g00856 08 19054302 19062570 Cca02g02150 02 41746248 41754144 PCT