Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02160 ATGGGCAGTGATAATGGGATTCAGACTGTCTCCAAACAAGTGCTAGAACAAGGTTTTGATTGCCACCAGAAGAAGGATCTCAAGCAAATGGACATCAAGTCTCAAGCTGAGAGATTTGATGGAGCTTCTTCTGAAGATTGCGATAACTCATTGCAAGTTGCTTCTTCTTCGTCAAGACGAGGTTTGGAACATTGCATCACAGCCCCTGTTGGAACTGAGAGAAACCCACTTATAGTTGATGACGAGATTATGTTTCCTAGATCCATGACAGAAAAGAAGGGATTCCCTAGGCAGGATACAATATTGGACAGGCTGTCTGAGCAAGTGAAGCAACTGATTAATAACCTAGTGAGGATACAAAACGATGGGACTGTTGAAGTTGATCTAGAAAGGAGTGCATCTGTTGCTCCAGAATTGTTCGAGCTCCAATCTTTTGCAGAGTTAACAGTGAGTGAAAGTCTTAGTTCAGAGTCAAAAAAATGTGTTCCACGGTTACAAATTGTCATACTTGTGGTTGGAACTAGAGGCGACGTACAACCTTTTCTGGCCATTGCAAAGAGACTTCAGGAGTATGGTCATCATGTTAGGCTGGCAACTCATGCTAATTTCAAAACATTTGTAAAGTCTGCTGGTGTCGATTTCTATCCTCTGGGTGGTGATCCTCGTGTATTGGCAGGATATATGGCAAGGAATAAAGGTTTGATCCCTTCTGGACCGGCTGAAGTATCTACCCAAAGAAAGCAGCTGAGGGCCATCATTGATTCCCTTCTTCCGGCATGCACAGCACCTGATATGGAAACTGGTGTTCCTTTCAGAGCTCAAGCTATTATTGCCAATCCTCCTGCTTATGGACATGTACATATTGCTGAGGCCCTTGGGGTACCCCTCCACATCTTCTTCACAATGCCATGGACGCCAACATATGAGTTCCCCCACCCTTTGGCACGTGTTCCTCAAAGTGCTGGTTATTGGCTGTCCTATATAATTGTAGATCTATTGATATGGTGGGGAATGCGAGGAATTATCAATGACTTCAGGAAAACAACATTGAAGCTTGCTCCTATTGCATACTTCAGTATGTACCGTGGATCAATATCTCATTTACCGACTAGCTATATGTGGAGTCCTCATGTTGTTCCGAAACCAAGTGACTGGGGCCCTTTAGTTGATGTTGTTGGTTATTGTTTCCTGAGCCTTGCATCAAAGTATCAACCTCGGGAAGACTTTGTCCATTGGATTAAAAAAGGACCACCACCTTTATATTTTGGGTTTGGGAGCATGCCTCTTGAAGATCCTACAAGAACAACAGATGTTATATTGGAGGCACTAAAAGATACTGAACAACGGGGAATTATTGACCGGGGTTGGGGCAATCTAGGGAATTTGGCAGAACTTCCTGACAATGTTTTCCTTCTAGAGGAATGCCCTCACGATTGGCTGTTTCCTCAATGTTCCGCTGTGGTGCATCATGGTGGAGCTGGAACCACGGCTACAGGATTAAAAGCTGGGTGTCCGACAACCATAGTTCCATTCTTTGGAGATCAGTTCTTTTGGGGAGATAGAATATATCAGAAAGAGTTGGGACCAGCCCCAATACCAATAGCTCAGCTCAGTGTTGAGAATTTATCAAATGCCATAAGATTTATGCTCCAGCCAGAGGTGAAATCTCGAGCAATGGAAATTGCTAAGTTGGTTGAGAATGAAGATGGTGTTGCCGCTGCGGTTGATGCATTCCATCGCCATCTACCTGATGAACTGCCACTGCCAATTCCATCTCCGGTGGAGGAGGATCACTTGAATCCTTTGCAGTGGTTTTTTCTCCAACTTGGAAAGTTCTGTTGTGCACCTTGTGGTGGTGTGGATACACGTCCTCTTCCAGATACGGGTCAATGGTTGCTCCTGGCGTTAAATGAGAAACTTCCTAGTCCAATTGTTGAGATATTAAGAGCTCGAATCATTGGACTGCACCATTTCTTGATGTTGTTCATGATGCTGGCATTCTCTGTGTTATTTGATTCTGTAAAAGCTCCGGGGCTTGGACTTGGTGCTAGGTACATGTTTACCATGGCAATTGGCCGCCTTCTTCGTTCCATAACTTTTGCATCTACAATTCTGCCATCAGCCCGTCCTTGGTGTGCTGGTTCTCGGTTCAGAGTTCCTGGATATCCTCACCCATGGGCTCAGAAATATTATGTTCCCTATGCTTCAGACCATGATGCTATCAACCAGTTGATAAAGCTAGATACAGCTTATGTTGACATTGGAAAACCAATTGGTGACTACCAGCCAGATTGGGGTTTGATGAGCTTTCTGGTTGATTTTCTGCGGCCCACTGTGTCTGAAGGACCTTCATGGTTCAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTCGTTGCTGTACTCACAGCCATGGCTTGGACGGAAGCCTATGGAGGTTTCAGTTCTGCTCTTGTATGGCTTCTTGTGTTGCACAGTACCCAAAGGGAAATACGAGAACGTCATCATTACTCTGTAGACTGCATTGTAGCCATCTATGTGGGGATCCTCTTGTGGAAGATGACAGGTTTTATCTGGTCACATCCTACATCTGGTAATAGGAGGCTGAGTAAGCTTGATAAGATTCAAAGCAGACTAATCCAAGCTGCAAAAGACTCTGACATTGGTCAAGTGAGGGAGCTTCTCAAAGACATTGAGTTAAGCAGTGAAGAGAGCAAGAATCCGACTGCAATTAAATATACACGGTTGTTTCGTGGTGCCACCATTTTCTTTGCACTCACCATTGTTGTTCTGGCTTTCACATTGACAAGTGATGGATGA 2844 0.4459 MGSDNGIQTVSKQVLEQGFDCHQKKDLKQMDIKSQAERFDGASSEDCDNSLQVASSSSRRGLEHCITAPVGTERNPLIVDDEIMFPRSMTEKKGFPRQDTILDRLSEQVKQLINNLVRIQNDGTVEVDLERSASVAPELFELQSFAELTVSESLSSESKKCVPRLQIVILVVGTRGDVQPFLAIAKRLQEYGHHVRLATHANFKTFVKSAGVDFYPLGGDPRVLAGYMARNKGLIPSGPAEVSTQRKQLRAIIDSLLPACTAPDMETGVPFRAQAIIANPPAYGHVHIAEALGVPLHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYIIVDLLIWWGMRGIINDFRKTTLKLAPIAYFSMYRGSISHLPTSYMWSPHVVPKPSDWGPLVDVVGYCFLSLASKYQPREDFVHWIKKGPPPLYFGFGSMPLEDPTRTTDVILEALKDTEQRGIIDRGWGNLGNLAELPDNVFLLEECPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTIVPFFGDQFFWGDRIYQKELGPAPIPIAQLSVENLSNAIRFMLQPEVKSRAMEIAKLVENEDGVAAAVDAFHRHLPDELPLPIPSPVEEDHLNPLQWFFLQLGKFCCAPCGGVDTRPLPDTGQWLLLALNEKLPSPIVEILRARIIGLHHFLMLFMMLAFSVLFDSVKAPGLGLGARYMFTMAIGRLLRSITFASTILPSARPWCAGSRFRVPGYPHPWAQKYYVPYASDHDAINQLIKLDTAYVDIGKPIGDYQPDWGLMSFLVDFLRPTVSEGPSWFSLLKKAGGGCNDLLYSGHMLVAVLTAMAWTEAYGGFSSALVWLLVLHSTQREIRERHHYSVDCIVAIYVGILLWKMTGFIWSHPTSGNRRLSKLDKIQSRLIQAAKDSDIGQVRELLKDIELSSEESKNPTAIKYTRLFRGATIFFALTIVVLAFTLTSDG 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02160 947 Pfam Glycosyltransferase family 28 N-terminal domain 167 310 IPR004276 GO:0005975|GO:0016758|GO:0030259
Cca02g02160 947 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 421 564 IPR002213 GO:0008194
Cca02g02160 947 PANTHER STEROL 3-BETA-GLUCOSYLTRANSFERASE UGT80B1 29 618 - -
Cca02g02160 947 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 167 582 - -
Cca02g02160 947 CDD GT1_Gtf-like 167 581 IPR002213 GO:0008194
Cca02g02160 947 Pfam PAP2 superfamily C-terminal 795 862 IPR025749 -
Cca02g02160 947 Coils Coil 102 122 - -
Cca02g02160 947 Gene3D Glycogen Phosphorylase B; 396 565 - -
Cca02g02160 947 Gene3D Glycogen Phosphorylase B; 167 570 - -
Cca02g02160 947 PANTHER STEROL 3-BETA-GLUCOSYLTRANSFERASE 29 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02160 Cca-Chr2 41915197 41933238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02160 188 620 Glycosyltransferase AT1G43620 80.549 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02160 K05841 - gmx:100778448 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00846 08 18666864 18678647 Cca02g02160 02 41915197 41933238 PCT