Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00764 ATGCAACAGTGGAAACTACCAATTTGTGAACATAGCATTCTTGTCCACTTTTGGCAATGGCCAAACTCCACAACTCAACCTTGCAGGCCACTGTGTGATGCCACCACCAGTGGCTGCACAGGGTTGAGCAGTGACATCAAGACATGCCAAGAACGTGGCATCAAAGTGTTGCTCTCCCTTGGAGGTGATGGTGGAACCTACTCCTTCAACTCACCTGATGAAGCCACACAACTTGCTTCCTACCTCTGGCAAAATTTCCTTGGAGGGCAATCTGGATCAGGACCATTAGGTGATGCTGTCTTGGATGGCATTGACTTTGACATAGAAGCTGGTGGAGTTGAGCATTGGGATGAACTAGCCAAGGCACTCAATGGTTACAGTTCACAAAGGAAAGTGTACTTGTCTGCAGCCCCACAGTGCATAATCCCAGACAAGCACTTGGATTCTGCCATCCAAACTGGGGTTTTTGACTATGTGTGGGTTCAGTTCTACAACAACCCTTCATGCCAATACTCAAGTGGAAACACCAACAACCTCATCAACGCATGGAACCAGTGGATCACAGTGCCAGCCACTCAGGTCTTCATGGGGCTTCCTGCTTCTGAGGCTGCTGTTCCAAGTGGAGGCTTTTTGCCTGCTGATGTGTTGAGTTCTCAGATTCTTCCTCAGATTAAACAGTCTCCAAAGTATGGTGGTGTCATGCTCTGGAACAGGTTCAATGATGTGCAAAATGGTTACAGTGCTGCTATTGTTGGGATTGTTTAA 765 0.4758 MQQWKLPICEHSILVHFWQWPNSTTQPCRPLCDATTSGCTGLSSDIKTCQERGIKVLLSLGGDGGTYSFNSPDEATQLASYLWQNFLGGQSGSGPLGDAVLDGIDFDIEAGGVEHWDELAKALNGYSSQRKVYLSAAPQCIIPDKHLDSAIQTGVFDYVWVQFYNNPSCQYSSGNTNNLINAWNQWITVPATQVFMGLPASEAAVPSGGFLPADVLSSQILPQIKQSPKYGGVMLWNRFNDVQNGYSAAIVGIV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00764 254 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 254 IPR001223 GO:0005975
Cca08g00764 254 PANTHER ENDOCHITINASE 29 252 - -
Cca08g00764 254 CDD GH18_hevamine_XipI_class_III 32 252 IPR045321 -
Cca08g00764 254 Gene3D Glycosidases 8 252 - -
Cca08g00764 254 SUPERFAMILY (Trans)glycosidases 20 249 IPR017853 -
Cca08g00764 254 PANTHER ACIDIC ENDOCHITINASE 29 252 - -
Cca08g00764 254 Pfam Glycosyl hydrolases family 18 44 241 IPR001223 GO:0005975
Cca08g00764 254 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 101 109 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00764 Cca-Chr8 14979639 14981358 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00764 32 254 Glycoside Hydrolase AT5G24090 56.889 1.35e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00764 K01183 - gmx:100815291 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00764 08 14979639 14981358 Cca02g02189 02 42407509 42408715 PCT