Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02189 ATGGGCAAGACCAAAACCTCTCATCATGCATCACATCTTCTCCTTCCCCTCCTCTTCTTCTCCACTCTCGTTTCAACCTCTCACGGCGGTGGCATAGCCATCTACTGGGGCCAAAACGGCAACGAGGGCACCCTCGCCGAAGCATGCGCCACAGGAAAATACACTCACGTTAACATAGCCTTTCTCAACACATTCGGCAACAGCCAAACCCCACAAATGAACCTCGCTGGCCACTGCAACCCTGCAACCAATTCCTGCACAAAATTCAGCCCCGAAATCAAAGACTGCCAAAGCAAAGGCATCAAGGTACTTCTCTCCATAGGTGGTGGAGTTGGAAGCTATTCTTTGTCTTCCGTTGAGGATGCAAGAAACGTTTCATCTTTCTTGTGGAACACTTTCTTGGGTGGCAAGTCATCGTCAAGGCCACTAGGTGATGCTGTGTTAGATGGCATAGACTTTGACATTGAACTTGGCTCCACGCAAAACTATGACCACCTTGCACGTTTTCTCAAGGCGTATAGTAAGAGGGTGTACCTAAGTGCTGCACCTCAGTGTCCTATTCCTGATAGGTTCTTGGGCACTGCCCTTGACACTGCCCTATTTGACTTTGTTTGGGTTCAGTTTTACAATAACCCTCCGTGTCAGTATGCTAATGGTAACATAAGTAATCTTGTGAGTTCATGGAACCGGTGGACTAGTACTGTGCCAGCAGGGAAATTCTTTTTGGGGTTGCCGGCGGCTCCGGCCGCCGCTGGAAGCGGTTTTGTTCCCGCCGATGTTTTGACCTCTCAGATCTTGCCGGTTATTAAGAAGTCGCCAAAGTATGGTGGGGTGATGCTGTGGTCAAGATTCTATGATGTCCAGAACGGGTATAGTAGTTCAATTGTTGGCAGCGTGTGA 900 0.4911 MGKTKTSHHASHLLLPLLFFSTLVSTSHGGGIAIYWGQNGNEGTLAEACATGKYTHVNIAFLNTFGNSQTPQMNLAGHCNPATNSCTKFSPEIKDCQSKGIKVLLSIGGGVGSYSLSSVEDARNVSSFLWNTFLGGKSSSRPLGDAVLDGIDFDIELGSTQNYDHLARFLKAYSKRVYLSAAPQCPIPDRFLGTALDTALFDFVWVQFYNNPPCQYANGNISNLVSSWNRWTSTVPAGKFFLGLPAAPAAAGSGFVPADVLTSQILPVIKKSPKYGGVMLWSRFYDVQNGYSSSIVGSV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02189 299 CDD GH18_hevamine_XipI_class_III 30 297 IPR045321 -
Cca02g02189 299 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 148 156 IPR001579 GO:0004553|GO:0005975
Cca02g02189 299 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 30 299 IPR001223 GO:0005975
Cca02g02189 299 Pfam Glycosyl hydrolases family 18 32 286 IPR001223 GO:0005975
Cca02g02189 299 PANTHER ACIDIC ENDOCHITINASE 9 299 - -
Cca02g02189 299 PANTHER ENDOCHITINASE 9 299 - -
Cca02g02189 299 SUPERFAMILY (Trans)glycosidases 27 295 IPR017853 -
Cca02g02189 299 Gene3D Glycosidases 30 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02189 Cca-Chr2 42407509 42408715 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02189 12 299 Glycoside Hydrolase AT5G24090 65.306 3.80e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02189 K01183 - gmx:100818728 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02189 02 42407509 42408715 Cca02g02189 02 42407509 42408715 ECH
Cca08g00764 08 14979639 14981358 Cca02g02189 02 42407509 42408715 PCT