Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00717 ATGAATCCGTGTCCAAAATTCAGTAATGTTATTGAGGTTATCTTGACAGTTTTGTTAGTGGGATTACAAGGAGTGCGAATTGGTGAATGCAGAGTAGCCACTAGATTGGATGACCTCGAGTACCCTGCTATCAGCTGCAGAAAACACAGTGCAGTTTTGACGGATTTTGGTGGTGTTGGTGATGGAAAAACATCTAACACCAAGGCCTTTCATTGTGCAATTAGCAATCTCAGCCATTATGCATCTGATGGTGGAGCTTTACTTGTTGTGCCACCAGGGAAATGGCTAACGGGAAGCTTCAATCTCACAAGCCATTTCACTCTTTTTCTCCAAAATGAAGCTACCATTCTAGCATCTCAGGATGAGTCAGAGTGGCCTGCACTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTTGTAATCACTGGTTACAATGGGACAATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGGGTGAATTGAAACTCACCAGGCCTTACATGATTGAGATTATGTTCTCTGATCACATACAGATATCAAATCTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGTCTGACCATTCTTGCTCCAGTTGACTCTCCCAACACTGATGGAATAGATCCAGATTCTTGTTCCAACACTAGGATTGAAGATTGCTACATTGTCTCTGGTGATGATTGCGTTGCAGTCAAAAGTGGTTGGGATGATTATGGAATCAAATTTGGAATGCCAAGCCAACACATAATAATCAGAAGGCTTGAATGTGTATCCCCTGATAGTGCCATGATTGCTTTAGGCAGTGAAATGTCAGGTGGAATCCAAGATATTAGGGCTGAAGACCTCACAGCCATCAACACTCAATCAGCAGTTAGGATCAAAACTGCAGTGGGTAGAGGAGCATATGTGAGAGACATATTTGTCAAAGGAATGAACTTAAACACTATGAAATATGTGTTTTGGATGACAGGTTCTTATGGCTCACACCCTGGCCCTGGCTTTGATCCCAAAGCACTTCCCAACATAACTGGAATAAACTATAGAGATGTGCTTGCAGATAATGTCACATATTCAGCAAGACTTGAAGGAATTGATAATGATCCCTTTACAGGAATTTGTATCTCTAATGTGACCATCCATAGTGGCGAAAAGAAATTGCAATGGAATTGCACTGATATTGAGGGGGTTTCAAGCAATGTCTATCCTAAGCCTTGTGAATTACTGCCACAGAAGGAAGAGAAAATTGCGTGTCCTTATCCTGATGACAAAGTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTCGAAAGTGTTTCATACTTTTGA 1428 0.4153 MNPCPKFSNVIEVILTVLLVGLQGVRIGECRVATRLDDLEYPAISCRKHSAVLTDFGGVGDGKTSNTKAFHCAISNLSHYASDGGALLVVPPGKWLTGSFNLTSHFTLFLQNEATILASQDESEWPALPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSYWWDKFHKGELKLTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGIDPDSCSNTRIEDCYIVSGDDCVAVKSGWDDYGIKFGMPSQHIIIRRLECVSPDSAMIALGSEMSGGIQDIRAEDLTAINTQSAVRIKTAVGRGAYVRDIFVKGMNLNTMKYVFWMTGSYGSHPGPGFDPKALPNITGINYRDVLADNVTYSARLEGIDNDPFTGICISNVTIHSGEKKLQWNCTDIEGVSSNVYPKPCELLPQKEEKIACPYPDDKVPIESVQLKTCSFESVSYF 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00717 475 Gene3D - 36 435 IPR012334 -
Cca08g00717 475 Pfam Glycosyl hydrolases family 28 147 427 IPR000743 GO:0004650|GO:0005975
Cca08g00717 475 PANTHER PECTIN LYASE-RELATED 14 468 - -
Cca08g00717 475 SUPERFAMILY Pectin lyase-like 45 470 IPR011050 -
Cca08g00717 475 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 14 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00717 Cca-Chr8 13554867 13558759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00717 39 467 Glycoside Hydrolase AT3G48950 70.115 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00717 - - gmx:100785005 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00717 08 13554867 13558759 Cca08g00717 08 13554867 13558759 ECH
Cca08g00717 08 13554867 13558759 Cca02g02218 02 42689287 42691708 PCT