Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02218 ATGTTGTGCAAGAGTAGAAAACTAAAACTTCACTGTGCCATGTCTAAGACCATGAAGTTGTTTCCACTACTCAGAAATTCCTATGTCATTGGTGTGATATCCTTAGTTCTAACATTGGGATCACTAAATGTGAAGGTAGCAGAATGCAGGGTCGCAAGTGGACCGGGAAACATAGAATACCCTGCCATCAATTGCCGAAAGCATAGTGCAGTTTTGACAGATTTTGGTGGGGTTGGTGATGGCAAAACATCCAACACTAAGGCCTTTCAATCTGCAATAAGCAAACTCAGCCAATATGCATCTGATGGGGGTTCACAACTTGTGGTGCCCCCAGGAAAATGGCTAACAGGACCCTTTAACCTCACTAGCCATTTCACTCTTTTTCTCCATAAGGATGCTGTTCTTCTTGCATCTCAGGTTGAATCTGAATGGCCACAACTTCCTGTACTACCTTCTTATGGAAGAGGAAGAGATGCTCCTGGTGGAAGGTTTAGCAGTCTAATTTTTGGAACTAACCTCACAGATGTTGTAATTACAGGTCAAAATGGTACAATTGACGGGCAAGGATCTTATTGGTGGGACAAATTCCACAAGAATCAATTGACACTCACCAGGCCATACATGATTGAGATCATGTACTCTGATCAAATCCAAATATCTAATCTCACATTGGTCAATTCTCCATCCTGGTTTGTCCATCCAATTTATAGCAGTAACATAATAATTCAAGGGCTTACCATTCTGGCACCAGTGGACTCTCCTAACACAGATGGCATAGACCCAGATTCATGTACAAACACTAGGATTGAGGACTGCTTTATTGTCTCCGGTGATGATTGTATTTCAGCAAAAAGTGGGTGGGATGAGTATGGAATTAAATTTGGAAGGCCAACCCAACACCTAATCATTAGAAGGATTACTTGCATATCCCCTGATAGTGCCATGGTTGCTTTAGGAAGTGAAATGTCTGGTGGAATTGAAGATGTAAGAGCTGAAGATCTCACTGCTATCAACACTGAATCAGCAATTAGAATCAAAACAGCTGTTGGAAGAGGGGCATATGTGAAAAACGTATTTGTGAAAGGAATGAACCTCAACACCATGAAATATGTATTTTGGATGACTGGCTCTTATGGACAACACCCTGACAATAAGTTTGATCCCAAAGCACTTCCTAACATCACTGGAATAAATTATAGAGACGTTATTGCAAAGAACGTCACATATTCCGCAAAACTTGAAGGGATTTCCAATGACCCTTTCACAGGAATCTGCGTTTCTAATGTGACTATCCAAGTGAGTGAACAGAAAAAGAAGCTTCAATGGAATTGCACTAATGTTGCTGGAGTTGCAAGCAATGTCACTCCTGTCTCTTGTCCATTGCTGCCAGAGAAAGGGAAATTTGATTGTCCTTTTCCAAATGACAAATTGCCCATTGAAAATGTTCAGTTGAAGACATGTTCCTCTGTGTAA 1473 0.41 MLCKSRKLKLHCAMSKTMKLFPLLRNSYVIGVISLVLTLGSLNVKVAECRVASGPGNIEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAISKLSQYASDGGSQLVVPPGKWLTGPFNLTSHFTLFLHKDAVLLASQVESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTNLTDVVITGQNGTIDGQGSYWWDKFHKNQLTLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNIIIQGLTILAPVDSPNTDGIDPDSCTNTRIEDCFIVSGDDCISAKSGWDEYGIKFGRPTQHLIIRRITCISPDSAMVALGSEMSGGIEDVRAEDLTAINTESAIRIKTAVGRGAYVKNVFVKGMNLNTMKYVFWMTGSYGQHPDNKFDPKALPNITGINYRDVIAKNVTYSAKLEGISNDPFTGICVSNVTIQVSEQKKKLQWNCTNVAGVASNVTPVSCPLLPEKGKFDCPFPNDKLPIENVQLKTCSSV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02218 490 Pfam Pectate lyase superfamily protein 73 127 IPR024535 -
Cca02g02218 490 SUPERFAMILY Pectin lyase-like 65 463 IPR011050 -
Cca02g02218 490 Pfam Glycosyl hydrolases family 28 165 449 IPR000743 GO:0004650|GO:0005975
Cca02g02218 490 Gene3D - 57 457 IPR012334 -
Cca02g02218 490 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 33 488 - -
Cca02g02218 490 PANTHER PECTIN LYASE-RELATED 33 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02218 Cca-Chr2 42689287 42691708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02218 18 488 Glycoside Hydrolase AT3G61490 65.000 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02218 - - gmx:100779166 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02218 02 42689287 42691708 Cca02g02218 02 42689287 42691708 ECH
Cca08g00717 08 13554867 13558759 Cca02g02218 02 42689287 42691708 PCT