Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00705 ATGGAGACACCATTAGTGGCCCAAAAGTTTACCTCAGAATCTGACTATTTGCCGGTGAAAAGGTTTGAGGATGTTAAATTTGTTTTGTGGACAGAGACAGTGAAGATATGGAGGATAGCATTACCAGTGGCATTGTCCCAGCTATTTCAGTATCTCACAAATTCCTCAGTTTCCATCTATGCTGGTCATATTGGAGACATTGAACTCTCTTCTATCTCTGTTCACCAAAGTGCCATCAGTTCCATCTGTTTTTACTTGCTGTTTGGTATGTCAACTGCCCTGGCAACACTTTGTGGCCAAGCTTTTGGAGCAGGTCAAATTCAGTCTACTTGTATTTATGTTCAAAGGTCATGGATTATACTTACTATCACTTGTATAATCCTATTGCCTATTTATGTATTTGCCACACCAATCTTAAAATTGCTTGGCCAGGATGAAGGAATAGCTGATCTTGCTGGCACATATTCTATACAAGTAATCCCCTTCATGTTTTCCTATGCTATATCTTTTCCCATCCAGAGATTTCTTCAGGCACAGGGCAAGGTTAAAGTTATTATGTGCATAGCATTTGTGGTTTTGCTTATACAAAATGTGCTGCTTTACATATTCATAAGTTCATTTGGTTGGGGTACGACCGGCTTAGCCATGGTGACTAATATCATAGGGTGGCTCTATGCTATGGCTTTGGTTTTCTATACCATTGGTTGGTGCAAGGAAGAGTGGACTGGATTAAATTGGATGGCATTTAGGGATTTGTGGGCCTTTGCTAAGTTAAGCCTTGCATCATCTGTTATGATTTGCTTAGAACAATGGAATGTTACAATCATCATGCTCCTTGCTGGTCGATTAGAAAATCCTGTGATTGCTGTTGGTTCCTACTCAATTTGCTTCAATTTTCAAGGTTGGTACTTCATGATACTCCTTGGAATAAACACAGCCATAAGTGTTCGTGTCTCCAATACACTTGGCATGTCGCATCCAAGAGCGGCCAAATACTCATTCTGTGTGACAATGTTCCAGTCTCTCCTCCTTGGTATTCTTTTCATGGCTGGTGTTTTTTTGACTAAAGAAGACTTGGCCATCATCTTTACCAACAGTAAGGATATGATAGAAGCTGTTGCTGATTTAGCATACCTTCTTGGTGTAACAATGGTTCTCAATAGCGCTTCACAGGTTATGTCAGGTGTGGCCATTGGAAGTGGATGGCAAGTTATGGTTGGTTACATAAACCTGGCATGTTATTACATTGTTGGACTCCCTATTGGAATTTTCCTTGGTTTCAAGCAGCATTTAGGGGTCAAGGGTCTCTGGGGAGGCACGATTTGTGGCATTATTCTTCAAATTTCAGTCCTCTTACTGATTATTTGGAAGACCAATTGGATAAAGGAGGTGGAGCAAACAGCACAACGCATGCGAATATGGAGCATTAACAGTATCGACTAG 1443 0.4075 METPLVAQKFTSESDYLPVKRFEDVKFVLWTETVKIWRIALPVALSQLFQYLTNSSVSIYAGHIGDIELSSISVHQSAISSICFYLLFGMSTALATLCGQAFGAGQIQSTCIYVQRSWIILTITCIILLPIYVFATPILKLLGQDEGIADLAGTYSIQVIPFMFSYAISFPIQRFLQAQGKVKVIMCIAFVVLLIQNVLLYIFISSFGWGTTGLAMVTNIIGWLYAMALVFYTIGWCKEEWTGLNWMAFRDLWAFAKLSLASSVMICLEQWNVTIIMLLAGRLENPVIAVGSYSICFNFQGWYFMILLGINTAISVRVSNTLGMSHPRAAKYSFCVTMFQSLLLGILFMAGVFLTKEDLAIIFTNSKDMIEAVADLAYLLGVTMVLNSASQVMSGVAIGSGWQVMVGYINLACYYIVGLPIGIFLGFKQHLGVKGLWGGTICGIILQISVLLLIIWKTNWIKEVEQTAQRMRIWSINSID 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00705 480 CDD MATE_eukaryotic 32 466 IPR045069 GO:0042910|GO:1990961
Cca08g00705 480 PANTHER PROTEIN DETOXIFICATION 1 473 - -
Cca08g00705 480 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 473 - -
Cca08g00705 480 TIGRFAM matE: MATE efflux family protein 42 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g00705 480 Pfam MatE 263 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g00705 480 Pfam MatE 42 202 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00705 Cca-Chr8 13249049 13252500 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00705 K03327 - gmx:100817098 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00705 08 13249049 13252500 Cca08g00705 08 13249049 13252500 ECH
Cca08g00705 08 13249049 13252500 Cca02g02226 02 42785199 42791837 PCT