Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02226 ATGGTGGTTGAGATGGACGCTCCCCTGCTAGGAGGCGCAGGGACGACGGAGAACAAGGACTACCCGGCGGTGAAAGAGTGGAAGGAGGCGAGGGAGGTTTTCTGGATTGAAACCAAGAGAATGTGGGAGATTGCGTTGCCCATTGTTTTCAACATTTGGTGCCAATTCGGTGTCAACTCCGTCACCAACATCTTCGTTGGCCACCTCGGCGACATTGAGCTCTCTGCTGTCTCTCTTATTAACTCTGTCATCGGCACTTTTGCTTTTGGCTTCATGCTTGGGATGGGGAGTGCAACTGAGACGCTTTGCGGCCAAGCTTATGGAGCTGGGCAGATTCATTTGCTTGGTGTTTATATGCAACGCTCGTGGGTAATTTTATTCATGACCAGTATTTTGCTCTTGCCAATATACATTTTTGCTGCTCCCATTTTGAAGCTTATTGGTCAACAAGCGGATATAGCTGATCTTGCTGGGAGTTTCTCTGTTTTAGTAATTCCGCAATTTCTTTCCCTTCCCTTCAACTTTCCAACACAAAAGTTCCTTCAAGCTCAGAGCAAGGTTAACGTCATTGCATGGATTGGGTTGGTGGCTTTAATTTTGCACATTGGGATGCTATGGGTCTTAATCTATGTGTTGGGTTTAGGCTTAACTGGTGCAGCTTTGGCATTTGATATAACAAGTTGGGGGATTACAATATCTCAACTTGTTTATGTTGTGTTCTGGTGTAAGGATGGATGGAATGGATTGACATGGTTGGCTTTCAAGGATATTTGGGCCTTTGTTAGGCTTTCTCTTGCATCAGCTGTGATGCTTTGTCTTGAAGTTTGGTATATGATGAGCGTCATTGTTCTTGCTGGCCACCTTAATAATGCAGTGATTGCTGTTGATTCTCTCTCTATATGCATGAATATCAACGGGTGGGAAAGCATGATCTTTATTGGAGTAAATGCAGCTGTCAGTGTCAGAGTTTCCAATGAACTTGGGCTTGGACGTCCAAGAGCTGCCAAATACTCTGTCTACGTGATAGTGTTTCAGTCACTTCTTTTGGGAATCATTTTCATGGCTATTGTTTTGGTGACTAAAGACTATTTTGCCATCATTTTTACAAACAGCAAGGTTTTGCATGAGGCCGTTTCCAAACTAGGATTCCTCCTTGCTGTGACAATGGTTCTTAACAGTGTTCAACCTGTAATCTCAGGTGTTGCAGTTGGAGGTGGGTGGCAGGCCCTGGTGGCCTATATCAACATAGGTTGTTATTACTTATTTGGGCTTCCACTAGGGTTCATTCTTGGTTATACAGAAAATTTGGGAGTTGAGGGACTTTGGGGTGGTATGATATGTGGAATTTTTCTCCAGACCTCGATGCTGTTGGTCATACTTTACAAAACCAATTGGAATAAAGAGGTGGAACAAACATCTGAACGCATGCGAATATGGGGTGGACAAGACATTAATATTGATAAGATGGGGGATTCTACATAA 1482 0.4372 MVVEMDAPLLGGAGTTENKDYPAVKEWKEAREVFWIETKRMWEIALPIVFNIWCQFGVNSVTNIFVGHLGDIELSAVSLINSVIGTFAFGFMLGMGSATETLCGQAYGAGQIHLLGVYMQRSWVILFMTSILLLPIYIFAAPILKLIGQQADIADLAGSFSVLVIPQFLSLPFNFPTQKFLQAQSKVNVIAWIGLVALILHIGMLWVLIYVLGLGLTGAALAFDITSWGITISQLVYVVFWCKDGWNGLTWLAFKDIWAFVRLSLASAVMLCLEVWYMMSVIVLAGHLNNAVIAVDSLSICMNINGWESMIFIGVNAAVSVRVSNELGLGRPRAAKYSVYVIVFQSLLLGIIFMAIVLVTKDYFAIIFTNSKVLHEAVSKLGFLLAVTMVLNSVQPVISGVAVGGGWQALVAYINIGCYYLFGLPLGFILGYTENLGVEGLWGGMICGIFLQTSMLLVILYKTNWNKEVEQTSERMRIWGGQDINIDKMGDST 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02226 493 CDD MATE_eukaryotic 37 471 IPR045069 GO:0042910|GO:1990961
Cca02g02226 493 PANTHER PROTEIN DETOXIFICATION 33 475 - -
Cca02g02226 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 33 475 - -
Cca02g02226 493 Pfam MatE 47 206 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02226 493 Pfam MatE 267 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca02g02226 493 TIGRFAM matE: MATE efflux family protein 47 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02226 Cca-Chr2 42785199 42791837 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02226 K03327 - gmx:100799559 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02226 02 42785199 42791837 Cca02g02226 02 42785199 42791837 ECH
Cca08g00705 08 13249049 13252500 Cca02g02226 02 42785199 42791837 PCT